sarek Public Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing Nextflow 441 443 configs Public Config files used to define parameters specific to compute environments at different Institutions Nextflow 98 306 ...
Added a test, but realized that Sarek has yet another edge-case. Clea… Jun 30, 2023 tests Add mock config for container detection. Jun 30, 2023 .editorconfig Reformat CITATION.cff as yaml. Update .editorconfig to not complain a… Jul 11, 2022 .gitignore Ignore vim tmp files Apr 25, ...
main.nf install more modules Nov 20, 2024 modules.json add sizes Nov 21, 2024 nextflow.config fix linting Nov 20, 2024 nextflow_schema.json add sizes Nov 21, 2024 nf-test.config add tests for sarek Nov 20, 2024 tower.yml initial template build from nf-core/tools, version 2.14.1 May ...
Hey!, i am running into various issues with the Nextflow installation in my Github action runs: a couple of examples: https://github.com/nf-core/sarek/actions/runs/3456705070/jobs/5769631081: 3s Run nf-core/setup-nextflow@v1 Error: Could...
docker pull nfcore/sarek:dev docker tag nfcore/sarek:dev nfcore/sarek:dev docker tag nfcore/sarek:dev nfcore/sarek:2.7 -name:Install Nextflow env: Expand Down 4 changes: 2 additions & 2 deletions4Dockerfile Original file line numberDiff line numberDiff line change ...
"text": "nf-core/sarek v${version} - ${runName}", "wrap": true }, { "type": "TextBlock", "spacing": "None", "text": "Completed at ${dateComplete} (duration: ${duration})", "isSubtle": true, "wrap": true }, { "type": "TextBlock", "text": "<% if (success) { %...