ATAC-seq peak-calling and QC analysis pipeline. Contribute to nf-core/atacseq development by creating an account on GitHub.
Pipelines " nf-core 目前涵盖了68个pipeline,包括RNA-seq, ATAC-seq,DNA-seq等,安装好环境可以直接用nextflow提交job进行分析。以atac分析流程为例 https://nf-co.re/atacseqInstall nextflow A DSL for pa…
nf-core:基于Nextflow开发的生信流程 之前文章介绍了Nextflow:《Nextflow-完整pipeline编写执行利器》,nf-core就是基于Nextflow开发的一个生物信息平台,包含如:scRNA-seq、RNA-seq、Hi-C、ATAC-seq、ChIP-seq等流程,每种流程都配有相应的文档和示例: 目前截止2020年11月,共有发布版本26个,开发中的流程15个,归档4个...
Breadcrumbs atacseq /docs / output.mdTop File metadata and controls Preview Code Blame executable file· 314 lines (217 loc) · 24.3 KB Raw nf-core/atacseq: OutputThis document describes the output produced by the pipeline. Most of the plots are taken from the MultiQC report, which summari...
生信分析工具五花八门,不同的工具得到分析结果常大相径庭。nf-core为此而生,解决分析流程的标准化、可移植、可重复的问题。汇聚了39个高质量的分析流程,主要的是基因组学,还有部分蛋白质组学分析流程。 网站https://nf-co.re 代码https://github.com/nf-core ...
fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genome.fa' gtf = 'https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genes.gtf' fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/reference/genome.fa' gtf = ...
nf-core/atacseq pull request Many thanks for contributing to nf-core/atacseq! Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requ...
nf-core/atacseqPublic NotificationsYou must be signed in to change notification settings Fork125 Star199 Code Issues39 Pull requests2 Actions Security Insights Additional navigation options New issue Closed jinmingda Hello, I was wondering if there's any particular reasons whygene_bedpath is missing...
master atacseq/lib/ Go to file Latest commit Git stats History Files Failed to load latest commit information. Type Name Latest commit message Commit time . . NfcoreSchema.groovy NfcoreTemplate.groovy Utils.groovy WorkflowAtacseq.groovy WorkflowMain.groovy nfcore_external_java_...
Hi there, I ran the pipeline in two different settings: run1. using the default ref genome GRCh38 without specify gtf and run2. using the defualt ref genome GRCh38 and specified a custom gtf GENCODE.v26.basic.gtf According to the documen...