Welcome to @nf-core! @nf-core is a community effort to collect a curated set of analysis pipelines built using Nextflow (@nextflow-io). Here's how to get started: 📚 See available pipelines on the website. 👩
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Template update for nf-core/tools version 2.13.1 Mar 1, 2024 .github comment out nf-test from PR template Mar 8, 2024 assets bump version 3.0.2 Apr 3, 2024 bin black without line limit Mar 19, 2024 conf checks Mar 5, 2024
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nextflow run nf-core/eager -profile test,<docker/singularity/podman/shifter/charliecloud/conda/institute> Please check nf-core/configs to see if a custom config file to run nf-core pipelines already exists for your Institute. If so, you can simply use -profile <institute> in your command. ...
Shell 4 5 4 1 Updated on Sep 13, 2021 gh-actions-lint Public GitHub Action to run nf-core code linting on a Nextflow pipeline github workflow automation bioinformatics pipeline nextflow actions Shell 1 3 0 0 Updated on Jul 23, 2020 ©...
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.github add template updates Mar 24, 2025 .vscode Template update for nf-core/tools version 3.1.0 Dec 12, 2024 assets bump version to 2.13.0 Mar 28, 2025 bin add db formatting Mar 25, 2025 conf activate chunking in test_single
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nf-core/references is a bioinformatics pipeline that build references. How to hack on it Have docker, and Nextflow installed nextflow run main.nf Some thoughts on reference building: We could use the glob and if you just drop a fasta in s3 bucket it'll get picked up and new resources bui...