analysisthatisnotimplementedelsewhere. Keywords:Next-generationsequencing,Bioinformatics,Populationgenetics,Associationstudies Background Nextgenerationsequencing(NGS)platformscangen- eratelargeamountsofsequencingdata,butoftenwith highsequenceerrorrates.Forlowtomediumdepthdata fastandefficientimplementationareneededtohandle...
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Next generation sequencing (NGS) data analysis is highly compute intensive. In-memory computing, vectorization, bulk data transfer, CPU frequency scaling are some of the hardware features in the modern computing architectures. To get the best execution time and utilize these hardware features, it is...
The program allow the user to choose between combinations of existing methods and can perform analysis that is not implemented elsewhere.Background Next generation sequencing (NGS) platforms can generate large amounts of sequencing data, but often with high sequence error rates. For low to medium ...
Relevance of next generation sequencing (NGS) data re-analysis in the diagnosis of monogenic diseases leading to organ failure Claudia Saglia, Valeria Bracciamà, Luca Trotta, Fiorenza Mioli, Angelo Corso Faini, Giulia Margherita Brach Del Prever, Silvia Kalantari, Maria Luca, Carmelo ...
High-throughput DNA sequencing technologies are generating vast amounts of data. Fast, flexible and memory efficient implementations are needed in order to facilitate analyses of thousands of samples simultaneously. We present a multithreaded program sui
bindicates methods for which ANGSD is the de facto implementation and care user supplied extensions for ANGSD. The basis for each analysis is either the sequencing data (Seq), base counts (BC), genotype likelihood (GL), sample allele frequencies (SAF) or genotype probabilities (GP)....
Thus, this filter can serve as a paradigm for analysis of genome-wide next-generation sequencing data of large cohorts with a high mutational burden. Analysis of TCGA melanoma data using such a multi-step filter discovered novel and ... J Guan,R Gupta,FV Filipp - 《Scientific Reports》 被...
Seven Bridges GRAF™ Suite comprises bioinformatics workflows and tools for secondary analysis of next generation sequencing (NGS) data, based on a pan-genome graph reference. These tools are able to call variants with superior accuracy, without compromising on speed or cost. GRAF™ uses standard...
Next-generation sequencing (NGS) technologies in clinical diagnostics open vast opportunities through the ability to sequence all genes simultaneously at a cost and speed that is superior to traditional sequencing approaches. On the other hand, the practical implementation of NGS in routine diagnostics ...