Geoms to plot networks with ggplot2 briatte.github.io/ggnetwork/ Topics ggplot2rnetwork-visualization Resources Readme Code of conduct Code of conduct Activity Stars 147stars Watchers 8watching Forks 28forks Report repository Releases5 v.0.5.13Latest Feb 14, 2024 + 4 releases Contributors6 Languages HTML98.6% R1.4%
Heatmaps were computed with ggplot269, network visualizations were created with igraph67. All statistical tests were two-sided and results were regarded as significant when p < 0.05. All confidence intervals were computed at the 95% confidence level. The median of LRPau scores was used to...
we created two synthetic data sets, SD1 and SD2, which each consisted of 4000 samples with 32 proteins with known synthetic interactions. SD1 contained homogeneous data in the sense that all synthetic cancer samples had the same interaction network (Fig.3a...
Visualize the results using limma's built-in plotting functions or by exporting the data and using ggplot2 for visualization. To remove batch effects using the Combat package, the combat() function to adjust for batch effects by specifying the variables that contain the batch information and the...
igraph: network analysis and visualization in R. Accessed April 17, 2024. https://kateto.net/netscix2016.html 30. Mahmoud AI. Metabolic switches during development and regeneration. Development. 2023;150(20):dev202008. doi:10.1242/dev.202008 PubMedGoogle Scholar 31....
networkD3包基于D3.JS(最流行的可视化库之一)构建,还可以和R中常见的网络可视化包例如network、igraph等连用,支持管道操作符%>%(dplyr中常用,读者可自行学习)和ggplot2语法,是一个非常灵活的网络可视化包,包的作者在Stackoverflow上也非常活跃,经常会解答一些使用者提出的问题。
‘ggtangle’ extends the ‘ggplot2’ plotting system to support network visualization. ‘ggtangle’ is inspired by ‘ggtree’ and aims to work with network associated data. ✍️ Authors Guangchuang YU School of Basic Medical Sciences, Southern Medical University https://yulab-smu.topAbout...
A UMAP visualization of the COVID-19 dataset labeled by cell type, modality, sample ID, and severity. B Label transfer accuracy indicates that our embedding is consistent with the original cell type annotation on the majority cell types. Cell types with bad accuracy are due to only a few ...
Visualization of docking results of hub gene with potential compounds, licochalcone a (a), isorhamnetin (b), kaempferol (c), quercetin (d), and formononetin (e) generated withCXCL8in 3D and 2D, with 3D results on the left and 2D results on the right ...
Bubble plots for the KEGG pathway and GO terms were constructed with the R package (ggplot2) [60]. Qualitative real‑time time PCR (qRT‑PCR) validation To validate the accuracy of our RNA-seq data and DEGs we performed qRT‑PCR analysis, the cDNA was synthesized from 11 μg ...