Neighbor joining trees based on mtDNA sequences from C. chameleon samples.Dan Bar YaacovKarmit ArbelThauYael ZilkaOfer OvadiaAmos BouskilaDan Mishmar
Naruya Saitou和Masatoshi Nei在1987年将NJ法发表在Molecular Biology and Evolution中,至今已有超5万的引入量,实在是生物信息学中超重量级的文章。 P.S. 由于小弟对图论一知半解,所以后面写的时候可能各种术语穿插使用,望见谅。 The neighbor-joining method: a new method for reconstructing phylogenetic trees 术语...
The neighbor-joining method: a new method for reconstructing phylogenetic trees. A new method called the neighbor-joining method is proposed for reconstructing phylogenetic trees from evolutionary distance data. The principle of this me... N Saitou,M Nei - 《Molecular Biology & Evolution》 被引量...
Keywords:phylogenetictree;neighbor-joiningmethod;fastalgorithm;progressivemultiplealignment Phylogenetictreesareusedtoexpresstheevolu— tionaryhistoryofagroupoforganisms11 .Construc— tionofanevolutionaryhistoryforasetofcontempo— rarytaxabasedontheirpairwisedistanceisNP—corn— ...
Nevertheless, we rely on the existing similarity measures for building phylogenies of non-biological data because such trees render a good layout for data exploration. Live Neighbor-Joining may be an interesting alternative to Neighbor-Joining in the construction of such visual maps because different ...
Saitou N, Nei M.. The Neighbor-Joining Method-a New Method for Reconstructing Phylogenetic Trees. Mol Biol Evol 4: 406-425 Coordination of groups of mobile autonomous agents using nearest neighbor rules Coordination of groups of mobile autonomous agents using nearest neighbor rules ...
It is nearly 20 years since the landmark paper (Saitou and Nei 1987) in Molecular Biology and Evolution introducing Neighbor-Joining (NJ). The method has become the most widely used method for building phylogenetic trees from distances, and the original paper has been cited about 13,000 times...
Lasttime:Multiplesequencealignment ClustalW:acommonheuristicmultiplealignmentprogram Constructmatrixofpairwisealignmentscores(alladynamicprogramming) Convertalignmentscorestodistancescoresaccordingtoevolutionarymodel [Kimura1983model] Constructaguidetreeusingneighbor-joining(NJ)treebuildingalgorithm --theguidetreeroughlyrepres...
It is nearly 20 years since the landmark paper (Saitou and Nei 1987) in Molecular Biology and Evolution introducing Neighbor-Joining (NJ). The method has become the most widely used method for building phylogenetic trees from distances, and the original paper has been cited about 13,000 times...
DecentTree is a cross-platform command-line program and also a C++ library for inferring phylogenetic trees (in newick format) from distance matrices (supplied in phylip distance matrix formats), or alignments (supplied in fasta format), using well-known algorithms, such as Neighbour Joining, BION...