需要到官网下载dataset的二进制文件:一个是dataset(这个才是下载我们序列最重要的文件),另外一个是dataformat使用来转换json的数据到表格数据(不是最重要) 官网推荐下载的两个工具 MacOS命令下载(curl) curl-odatasets'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/mac/datasets'curl-odataformat...
When unpacking a downloaded NCBI dataset zip folder with standard unzip on macOS, I get the following error: Archive: results/ncbi_dataset.zip skipping: README.md need PK compat. v4.5 (can do v2.1) skipping: ncbi_dataset/data/data_report...
readbiomed-ncbi-pathogen-dataset-generation This package has been used for the generation of datasets with information about pathogens and MEDLINE citations associated to them using resources from NCBI (National Center for Biotechnology Information). This package has code to generate pathogen information ...
Sequence databases, such as NCBI, are a very important resource in many areas of science. Downloading small amounts of sequences to local storage can easily be performed using any recent web browser, but downloading tens of thousands of sequences is not as simple. NCBI Mass Sequence Downloader...
需要到官网下载dataset的二进制文件:一个是dataset(这个才是下载我们序列最重要的文件),另外一个是dataformat使用来转换json的数据到表格数据(不是最重要) 二进制文件下载 MacOS命令下载(curl) curl-o datasets'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/mac/datasets' ...
Sequence databases, such as NCBI, are a very important resource in many areas of science. Downloading small amounts of sequences to local storage can easily be performed using any recent web browser, but downloading tens of thousands of sequences is not as simple. NCBI Mass Sequence Downloader...
NCBI-disease BioBERT Named Entity Recognition (NER) NCBI Disease UniNER-7B Named Entity Recognition NCBI-disease CL-KL UIE ncbi_disease KnowCoder-7b-IE Papers Dataset Loaders Edit AddRemove Tasks Edit Similar Datasets Species-800 BC2GM JNLPBA ...
SNP/indel/CNV/Deletion dataset header order plus NCBI SRAZhengkui Zhou
10,000 ESTs as of 10th June 2014).]]>Waleska MaldonadoAguayoJacqueline ChávezMardonesAna Teresa GonçalvesCristian GallardoEscárate
Elsevier B.V.SoftwareXPina-Martins F, Paulo OS (2015) NCBI Mass Sequence Downloader-Large dataset downloading made easy. SoftwareX 5:80-83.Pina-Martins F, Paulo OS. Ncbi mass sequence downloader-large dataset downloading made easy. SoftwareX. 2016....