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If all is fine, upload sequences in mySub/ to the ENA production server as a real submission: ./multiSub up-ena mySub --prod You can then find the raw receipt with your ENA accessions in mySub/enaReceiptSample.DATE.xml and a parsed tsv table with the accessions and your internal iden...
[] #find counts of seqs for internal nodes for node in full_tree.traverse(): if node.is_leaf() == False: if node.name not in taxid_counts: taxid_counts[node.name] = [] for desc in node.iter_descendants(): if desc.name in taxid_counts: for seq in taxid_counts[desc.name]:...
fasterq-dump SRRXXXXXX --fasta-ref-tbl --internal-ref This command extracts only internal references into the output file. Internal references are non-standard scaffoldings the submitter included in the submission and the bases of them are stored in the accession. ...
INTERNAL PAGES ncbi.nlm.nih.gov 1 Notalgia paresthetica: the unreachable itch https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3663387 Skip to main content. Sign in to NCBI. US National Library of Medicine. National Institutes of Health. V3(1); 2013 Jan. 2013 Jan; 3(1): 3 6. ...