The NFDI4Chem converter service is a REST API and Python server implementation to convert mass spectrometry data from various instrument vendors and converts into the open mzML format using proteowizard-msconvert . It also allows validation of the converted mzML file using the OpenMS FileInfo tool....
devtools::install_github('wilsontom/MRMConverteR') Usage MRM-MS .mzML files should have been created using the ProteoWizard msconvert tool. NOTE this package has only been tested with MRM-MS data acquired on a TSQ Vantage (ThermoScientific) which were then converted to .mzML using ProteoWizard ...
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The first step in a metabolomics data processing workflow with Open Source tools is the conversion to an open raw data format likemzML. One of the main routes to mzML-formatted data is using Open Source converter msconvert developed by the Proteowizard team (Chambers et al. 2012), which is ...