A new bioinformatics analysis tools framework at EMBL-EBI (2010).Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, Paern J, Lopez R.Nucleic acids research 2010 Jul, 38 Suppl: W695-9.doi:10.1093/nar/gkq313 Muscle Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with...
A new bioinformatics analysis tools framework at EMBL-EBI (2010).Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, Paern J, Lopez R.Nucleic acids research 2010 Jul, 38 Suppl: W695-9.doi:10.1093/nar/gkq313 Muscle Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with...
VEGF, epicardial cells differentiate into cardiomyocytes at a low frequency, indicating the regenerative potential of the epicardium. However, infrequent conversion rates and diminished lineage plasticity after injury necessitate further studies to identify ways to enhance the regenerative response of the epic...
AAV capsid genes were sequence verified, and the resultant contigs were analyzed using a custom Perl pipeline that assessed multiple sequence alignments using Clustal Omega (EMBL-EBI) to generate the overall serotype composition of the shuffled AAVs, by comparison of DNA and amino acid sequences ...
RNAseq analysis of early embryonic development was from the Deciphering the Mechanisms of Developmental Disorders progam via EMBL-EBI Expression Atlas (https://www.ebi.ac.uk/gxa)32,33. The data set was interrogated using the following Ensembl IDs: mouse Minion/gm7325, ENSMUSG00000079471; mouse ...
Raw sequencing files and processed gene counts of each experiment were deposited in the ArrayExpress database (Brazma et al., 2003) at EMBL-EBI (www.ebi.uk/arrayexpress) under the following accession numbers: E-MTAB-9852 (abamectin), E-MTAB-9855 (carbaryl), E-MTAB-9853(chlorpyrifos), E-...
Accession code: The RNA-seq data sets supporting the results of this study are available in the ENA repository (EMBL-EBI), under study accession PRJEB15314. How to cite this article: Tizioto, P. C. et al. Gene expression differences in Longissimus muscle of Nelore steers genetically diverge...
Sequence Search and Analysis The SWISS-PROT and TREMBL protein data bases were searched with the amino acid sequence of YNL083W (21) as query utilyzing the search and analysis services from EBI, an outstation of EMBL available at the World Wide Web. The program used was FASTA (22). Three...
The SNP-based CNV calls analysed in this study are publicly available from the supplementary material in17. The RNA-seq dataset is publicly available in the European Nucleotide Archive (ENA, EMBL-EBI) under accession PRJEB13188. All additional datasets generated and analysed during this study are...
The primary sequence was further confirmed via the MS/MS fragmentation sequencing approach. The synthetic replicates of this novel peptide and its analogue RAP- L1, T6, L8-BK, were characterized by multiple organ-bath based ex vivo rat smooth muscle tissue probes. The wild-type RAP-L1, T6-...