M.: Multiple Se- quence Alignment Using Reconfigurable Computing. Lecture Notes in Computer Science, Vol. 4419, 2007, pp. 379-384.Lima CRE, Lopes HS, Moroz MR, Menezes RM: Multiple sequence alignment using reconfigurable computing. ARC'07: Proceedings of the 3rd international conference on ...
see below) one MSA from its seed alignment—henceforth referred to as the “seed MSA”—and one from its full alignment—henceforth referred to as the full MSA. The seed MSAs were created by first aligning Pfam seed alignments (Pfam version 35.0, Nov. 2021) to their HMMs using thehmmalign...
Multiple sequence alignment visualizer. Contribute to sanderlab/alignmentviewer development by creating an account on GitHub.
One way of combining speed and sensitivity for genomic alignment is to use ananchored-alignmentapproach. In a first step, a fast search tool is used to identify a chain of high-scoring sequence similarities. These similarities are then used as anchor points for the final alignment, where a mo...
Multiple alignment of protein sequences can provide insight into sequence conservation across many species and thus allow identification of those sections of the sequence most critical to protein function. This insight can be augmented by joint display of conserved domains along the sequences. By fusin...
The discovery of functional non-coding RNA sequences has led to an increasing interest in algorithms related to RNA analysis. Traditional sequence alignment algorithms, however, fail at computing reliable alignments of low-homology RNA sequences. The spatial conformation of RNA sequences largely determi...
A multiple sequence alignment of the H-NOB domains from the basal sGC clade and the nematode specific sGC clade with prokaryote H-NOB sequences is shown in Figure 7. This alignment shows the high degree of sequence conservation between cyanobacterial H-NOB sequences and the sequences in the ...
Sequence alignment of CR4 or CR5 of LDLR proteins from human, mouse and livestock known to be hosts for GETV (pig, horse, cattle, goat, rabbit) show that the key amino acids for virus entry are completely conserved. Comparison vertebrate proteins with their mosquito homolog also revealed hig...
Versions Notes Abstract This paper introduces a heuristic for multiple sequence alignment aimed at improving real-time object recognition in short video streams with uncertainties. It builds upon the idea of the progressive alignment but is cognitively economical to the extent that the underlying edit ...
3.2. Multiple Sequence Alignment and Phylogenetic Analysis In the plant kingdom, the R2R3-MYB is the largest subgroup of MYB proteins that harbors a highly conserved DNA-binding domain composed of two adjacent MYB repeats [5]. To explore the characteristics of the potato R2R3-MYB members, the...