Pei J, Grishin NV (2014) PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information. Methods Mol Biol 1079:263–271 CentralJ. Pei and N. V. Grishin, PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-...
Protein sequence alignment is the task of identifying evolutionarily or structurally related positions in a collection of amino acid sequences. Although the protein alignment problem has been studied for several decades, many recent studies have demonstrated ...
Protein Multiple Sequence Alignment - Stanford AI Lab:蛋白质多序列比对-斯坦福大学人工智能实验室 热度: Fugue Sybyl-X培训使用手册--搜索同源蛋白序列Find Homologues of Uncharacterized Gene products Using Environment-specific substitution tables 热度:
Comparative analyses of whole-genome protein sequences from multiple organismsExperimental evolutionPhylogeneticsPhylogenies based on entire genomes are a powerful tool for reconstructing the Tree of Life. Several methods have been proposed, most of which employ an alignment-free strategy. Average sequence ...
Multiple Sequence Alignment (MSA) is a basic tool for bioinformatics research and analysis. It has been used essentially in almost all bioinformatics tasks such as protein structure modeling, gene and protein function prediction, DNA motif recognition, and phylogenetic analysis. Therefore, improving the...
Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res. 1997; 25(17):3389–402. Article CAS PubMed PubMed Central Google Scholar Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning dna sequences. J Comput Biol. 2000;...
Section 3 presents the protein structure classification problem and the implementation of the new procedure for this application. Section 4 concludes the paper with a discussion. A web-based toolbox is also introduced in the Appendix to illustrate the advantages of the proposed technique. This tool...
Protein profiles are strictly associated with immune modulation across datasets, and this provides the basis for investigating immune markers associated with metastasis. The proteome of LN metastatic cells recapitulates the proteome of the primary tumor sites. Conversely, the LN microenvironment proteome ...
A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives. Multiple comparison or alignmentof protein sequences has become a fundamental tool in many different domains in modern molecular biology, from evolutionary... Thompson,D Julie,Linard,... ...
Multiple Sequence Alignment (MSA) is a basic tool for bioinformatics research and analysis. It has been used essentially in almost all bioinformatics tasks such as protein structure modeling, gene and protein function prediction, DNA motif recognition, and phylogenetic analysis. Therefore, improving the...