MSstats MSstats is an R-based/Bioconductor package for statistical relative quantification of peptides and proteins in mass spectrometry-based proteomic experiments. It is applicable to multiple types of sample preparation, including label-free workflows, workflows that use stable isotope labeled reference...
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本文内容 Syntax Standards information MSStatsType Dictionary Members See also [Some information relates to pre-released product which may be substantially modified before it's commercially released. Microsoft makes no warranties, express or implied, with respect to the information provided here.]The...
3. What are the possible causes of the error? The problem is due to thelme4package which we use to fit some statistical models in thegroupComparisonfunction. It has an issue with the older versions of the library Matrix that are not solved automatically on regular MSstats install. ...
Evaluation on a controlled mixture, simulated datasets, and three biological investigations with diverse designs demonstrated that MSstatsTMT balanced the sensitivity and the specificity of detecting differentially abundant proteins, in large-scale experiments with multiple biological mixtures. Graphical Abstract...
To enable accessible and reproducible quantitative proteomics analyses in a cloud environment, we have integrated MaxQuant (including TMTpro 16/18plex), Proteomics Quality Control (PTXQC), MSstats, and MSstatsTMT into the open-source Galaxy framework. This enables the web-based analysis of label-...
The integration of MaxQuant and MSstats into the Galaxy framework enables their usage in a reproducible way on accessible large computational infrastructures, hence realizing the foundation for high-throughput proteomics data science for everyone. 展开 ...
tinytest::test_package("MSstatsdev") } 212 changes: 106 additions & 106 deletions 212 vignettes/MSstats.Rmd @@ -202,16 +202,16 @@ Visualization for explanatory data analysis. To illustrate the quantitative data ### Example ```{r, eval=FALSE} QuantData <- dataProcess(SRMRawData) # Pr...
下面我们用一个示例来看 MSstatsTMT 分析过程: library(MSstatsTMT) # 内置数据集,此处我们用Proteome discover的数据做演示 # data(raw.pd) # 注释数据 # data(annotation.pd) # Proteome discover数据转换成MSstatsTMT数据对象 input.pd <- PDtoMSstatsTMTFormat(raw.pd, annotation.pd) ...