The Prenatal Mouse Brain Atlas is the only comprehensive book available for studies of mouse brain development from early embryonic to late fetal stages. Color images of whole, hematoxylin, and eosin stained sagittal, coronal, and horizontal sections are provided at four different ages. In addition...
brainmiceanatomyColor images and annotated diagrams of: Gestational Days 12, 14, 16 and 18 Sagittal, coronal and horizontal sectiondoi:10.1007/978-0-387-47093-1_4SchambraUtaSpringer USSchambra UB. Prenatal Mouse Brain Atlas. Springer: New York, NY, USA, 2008....
hippocampal formation; HY, hypothalamus; MB, midbrain; OLF, olfactory area; PAL, pallidum; STR, striatum; TH, thalamus; VS, ventricular system.c, UMAP of the integrated MERFISH and scRNA-seq data (left). Spatial maps of the cell types in example coronal and sagittal sections are also shown...
can be accessed as follows: DropViz (dropviz.org) and Mouse Brain Atlas (http://mousebrain.org/genesearch.html). Visium Spatial Transcriptomic Datasets for sagittal and coronal sections of the mouse brain provided by 10x genomics (https://support.10xgenomics.com/spatial-gene-expression/datasets...
Allen mouse brain atlas The Allen Mouse Brain Atlas provides genome-wide, three-dimensional, high-resolution in situ hybridization (ISH) gene expression images for approximately 20,000 genes in the sagittal section for the 56-day old male mice [17]. In addition, coronal sections at a higher ...
e, Visium showing the expression of Mbp to highlight presence of white matter tracts in the coronal brain section. Extended Data Fig. 6 Multimodal quantification of Cluster 8 gene Igtp and Cluster 4 gene Timp1. a, Representative sagittal section from female P30 mouse 24 h after LPS ...
a, Sagittal maximum intensity projections. b, Coronal maximum intensity projections. c, Axial maximum projections. d-f, Close-ups where capillary level staining is evident. The experiment was performed 9 times with similar results. Supplementary Figure 2 Experimental measurement of the point spread fu...
To ground our observations in a spatial sense, we generated 10X Genomics Visium spatial transcriptomics data from a P8 sagittal section. Alignment with single-cell short-read HIPP data confirmed the spatial localization of excitatory neurons in the CA regions and subiculum (Fig.6a), and alignment...
Each subcortical structure was concurrently delineated through coronal, sagittal, and horizontal planes of the average template at 10 μm voxel resolution to create smooth 3D volumes. We present only one example out of 329, the interpeduncular nucleus in the midbrain (IPN) (Figure 4A). First,...
or placed in proper orientation upon the cryostat chuck. Sections were obtained serially 16–20 μm-thick in either the sagittal or transverse planes through the secondary prosencephalon on a Leica CM3500 S cryostat, and mounted as 3–4 parallel series onto Superfrost-plus slides (Menzel-Gläse...