+ Isoform co-expression network analysis with PacBio MAS-Seq + + + Network visualization + + + Biological context for co-expression modules + + Differential module eigengene (DME) analysis + + + Module trait correlation + + + Enrichment analysis + + + Exploring modules in...
To better explain the method of determining clustering center in this paper, the concept of module eigengene (ME) is introduced: In GCNA, a vector ME is often used to represent the expression profiles of all genes in a gene module (cluster). Generally, Principal Component Analysis (PCA) is...
The module eigengene expression, adjacency matrix heatmap, Module-Trait relationships, and co-expression gene modules were calculated based on Pearson correlation. Finally, the module "lightpink1" consisting of RD26 and SRMT was selected and their co-expressed genes corresponding to salt tol- erance...
Results In the present study, high-throughput RNA sequencing (RNA-Seq) of ‘Nagafu No. 2’ buds was conducted to characterize the transcriptional response to 6-BA treatment during key period of floral transition. A weighted gene co-expression network analysis (WGCNA) of the differentially express...
Blood vessels in the CNS form a specialized and critical structure, the blood–brain barrier (BBB). We present a resource to understand the molecular mechanisms that regulate BBB function in health and dysfunction during disease. Using endothelial cell e
(Table1). Further analysis showed that the alleles from the three haplotypes had a high degree of sequence identity in the coding sequence (CDS), protein, and 1500 bp-length promoter sequence, respectively (Additional file1: Fig. S2). Taken together, these results confirm that our assembly ...
+ Differential module eigengene (DME) analysis + + + Module trait correlation + + + Enrichment analysis + + + Exploring modules in external datasets + + Projecting modules to new datasets + + + Module preservation and reproducibility + + + Cross-species and cross-modality an...
Overview of the toxicogenomic module associations with pathogenesis (TXG-MAP) for analysis of liver gene expression changes. (a) Module 69 consists of co-induced genes; genes are ordered clockwise starting at the hub gene (Mbd2), with decreasing correlation against the module eigengene. Nodes are...