= 4 TG (male)] for the microbiome analysis by either 16 s rRNA gene amplicon or shotgun sequencing methods. The animals were kept in 3–4 different cages to avoid the ‘cage affect’ bias in data analysis. Both male and females were used for the fecal sample collection depending ...
& Cox, J. The MaxQuant computational platform for mass spectrometry-based shotgun proteomics. Nat. Protoc. 11, 2301–2319 (2016). Article CAS PubMed Google Scholar Patel, V. J. et al. A comparison of labeling and label-free mass spectrometry-based proteomics approaches. J. Proteome Res ...
In addition, we assessed systemic immunity by flow cytometry and the gut microbiome using shotgun metagenomic sequencing. We found that indeed kefir decreased repetitive behaviour in this mouse model. Furthermore, kefir prolonged stress-induced increases in corticosterone 60 min post-stress, which was...
ArticleADSCASPubMedPubMed CentralGoogle Scholar Verberkmoes, N. C. et al. Shotgun metaproteomics of the human distal gut microbiota.Isme. J.3, 179 (2008). Article Zhang, X. et al. Deep metaproteomics approach for the study of human microbiomes.Anal. Chem.89, 9407–9415 (2017). Article...
To this aim the multi-strain OttaBac® was subjected to the quantification of: i) cell viability by single cell analysis, and ii) microbial and strains composition by shotgun metagenomic sequencing. Results indicate high level of cells viability and confirmed that OttaBac® is composed of a...
Host-parasite interactions exert strong selection pressures on the genomes of both host and parasite. These interactions can lead to negative frequency-dependent selection, a form of balancing selection that is hypothesised to explain the high levels of
Optimization and use of peptide mass measurement accuracy in shotgun proteomics Mol. Cell. Proteomics., 5 (2006), pp. 1326-1337 View PDFView articleCrossrefView in ScopusGoogle Scholar 27. Wessel D., Flugge U.I. A Method for the Quantitative Recovery of Protein in Dilute-Solution in the ...
Development and characterization of sixteen microsatellite markers for the federally endangered species: Leptodea leptodon (Bivalvia: Unionidae) using paired-end Illumina shotgun sequencing. Conserv. Genet. Res. 2012, 4, 787–789. [CrossRef] 22. Lance, S.L.; Love, C.N.; Nunziata, S.O.; ...