文本文件包含以下字段:RNA(例如hsa-miR-21),RNA_class(例如miRNA),miRBase_Last_Version(miRBase的最新更新版本;例如hsa-miR-21-5p),miRBase_accession,miRNA_family(miRBase家族;例如mir-21),circRNA_accession,有机体,exRNA_form(例如外来体),样品,Disease_or_cell_line,PubMed_ID,方法(分离和定量RNA),描述...
根据序列在不同物种间的保守性,将miRNA family划分成Broadly、poorly、conserved。 可以看到,TargetScan主要的功能内容都在首页,快来一探究竟吧: 首先是Search for predicted microRNA targets in mammals,搜索哺乳动物中预测的microRNA靶标 ,可提供的子链接专库有: 人: TargetScanHuman小鼠 :TargetScanMouse果蝇:TargetSc...
4.Kerber, R.A.; Slattery, M.L. The impact of family history on ovarian cancer risk: The Utah population database. Arch. Intern. Med. 1995, 155, 905–912. 5.Tung, K.H.; Goodman, M.T.; Wu, A.H.; McDuffie, K.; Wi...
In this chapter, we review our major progress in P. aphrodite genomics and functional genomics, focusing on the genome sequencing and annotation, whole transcriptome analysis of flower development, analysis of orchid miRNA, and the integrative functional genomics database for the orchid family....
O, Le Guernevel S, Fombonne J, et al. (November 2014)."Regulation by miR181 family of the...
O, Le Guernevel S, Fombonne J, et al. (November 2014)."Regulation by miR181 family of the...
family=read.table("hg19_all_fimaly.txt",sep="\t")miRNA=unlist(strsplit(as.character(family$V4),","))dir.create("lncRNA")for(mirinmiRNA){file=paste("lncRNA/"mirsep="")link=paste("http://starbase.sysu.edu.cn/api/miRNATarget/?assembly=hg19&geneType=lncRNA&miRNA=",mir,"&clipExpNum...
region (untranslated region, UTR), but transcribed region, which causes the degradation of the target sequence, and animal miRNA target sequence tend to bind with the 3 'untranslated region and lead to inhibition of translation. In addition, plant miRNA gene sequence with a higher base ...
After silencing of Dicer in ECs, let-7 family miRNAs, miR-103, miR-221 and miR-27b have a higher turnover rate than miR-126-3p, miR-21, miR-23a and miR-26a39. We found that the expression levels of four miRNAs, including miR-103, were highly dependent on endothelial Dicer activity...
miRBaseConverter has a built-in database for querying miRNA information in all species and for both pre-mature and mature miRNAs defined by miRBase. In addition, it is the first tool for batch querying the miRNA family information. The package aims to provide a comprehensive and easy-to-use...