The miRBase Sequence database is the primary repository for published microRNA (miRNA) sequence and annotation data. miRBase provides a user-friendly web interface for miRNA data, allowing the user to search using key words or sequences, trace links to the primary literature referencing the ...
miRBase: the microRNA sequence database. Methods Mol Biol 2006;342:129-38. 8. O'Connell RM, Rao DS, Baltimore D. microRNA regulation of ... EV Makeyev,T Maniatis - 《Science》 被引量: 989发表: 2008年 miRBase miRBase: the microRNA sequence database. Methods Mol Biol. 2006;342:12...
常见的Databases有miRBase,PMRD和TargetScan等。其中,miRBase是最大的database。research时,可以通过cluster,expression或sequence判断未知核酸序列是否为miRNA。在查阅时,可查看改miRNA的树形发育图,如果是pri-miRNA则小写mir,pre-miRNA大写miR; PMRD是plant microRNA database,TargetScan用于预测可能的靶基因,靶基因就是mRN...
顺便安利一个关于miRNA的不错的网站tools4mirs The miRBase database is a searchable...Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript...annotation data are also available for download. 6 tRNA database 7 UTRdb/UTRsite真核生物mRNA 5'和3'...
miRBase主要由三部分组成:miRBase database、miRBase Registry和miRBase Targets database。 而miRBase Targets database则已经更名为 microcosm,并托管于EBI。 提交所用的格式为Fasta格式。最终,提交的序列将会加入到 miRBase Sequence Database中。 >hsa-let-7a-1 MI0000060 UGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCA...
•miRBase主要由三部分组成:miRBasedatabase、 miRBaseRegistry和miRBaseTargetsdatabase。而miRBaseTargetsdatabase则已经更名为 microcosm,并托管于EBI。 a6 miRNA注册提交所用的格式为Fasta格式。最终,提交的序列将会加入到 miRBaseSequenceDatabase中。 a7 miRNA搜索 a8 miRNA搜索 a9 miRNA搜索 a10 miRNA搜索 >hsa...
miRBase: the microRNA sequence database. Methods Mol Biol. 2006;342:129–38. : 10.1385/1-59745-123-1:129 .Griffiths-Jones S (2006) miRBase: the microRNA sequence database. Methods Mol Biol 342:129–138. : 10.1385/1-59745-123-1:129...
“Get sequence”得到相应FASTA格式的序列;茎环结构部分除Accession,ID,Description,Stem—loop信息之外,仍包括Deep sequencing数据,Genome context,该基因相关的Database links,基因所属Gene family;成熟序列部分也包括Accession,ID,sequence和Deep sequencing信息,但仍有试验证明(包括克隆,Northern以及Solexa测序等)和通过不...
miRBase主要由三部分构成:miRBasedatabase、miRBaseRegistry和miRBaseTargetsdatabase。而miRBaseTargetsdatabase则已经更名为microcosm,并托管于EBI。miRNA注册提交所用旳格式为Fasta格式。最终,提交旳序列将会加入到miRBaseSequenceDatabase中。 miRNA搜索 miRNA搜索miRNA搜索miRNA搜索>hsa-let-7a-1MI0000060UGGGAUGAG...
Name of the databaseURLMain featuresReferences miRBasehttp://microrna.sanger.ac.uk/miRNA sequences, annotations, and computationally predicted targetsGriffiths-Jones (2004), Griffiths-Jones et al. (2006, 2008) miRNAmaphttp://miRNAMap.mbc.nctu.edu.tw/Known and computationally predicted miRNAs and...