scripts and notes for learning python bioinformatics jupyter bokeh microbiology pyviz Updated Jun 4, 2024 Jupyter Notebook telatin / gan Star 35 Code Issues Pull requests 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria database nomenclature taxonomy pyth...
Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res. 35, e120 (2007). PubMed PubMed Central Google Scholar The Integrative HMP (iHMP) Research Network Consortium. The integrative human microbiome project: dynamic analysis of microbiome-host omics profiles ...
Notes select article Carbapenem therapy for bacteremia due to extended-spectrum β-lactamase–producing Escherichia coli or Klebsiella pneumoniae Research articleAbstract only Carbapenem therapy for bacteremia due to extended-spectrum β-lactamase–producingEscherichia coliorKlebsiella pneumoniae Nan-Yao Lee, W...
In this study, which comprises the largest dataset of spaceflight-associated microbiome data so far, we systematically queried the microbiome architecture of short-term spaceflight. Previous efforts, such as the NASA twins study, have had difficulty mapping microbiome shifts due to small sample sizes,...
Print Guide as PDFCompare journals About the journal Aims and scope Food Microbiology publishes original research articles, short research communications, opinions, and review papers on all aspects of the microbiology of foods and food environments, including safety, shelf-life, diagnostics, ecology, an...
Members of the bacterial genus Sulfurimonas (phylum Campylobacterota) dominate microbial communities in marine redoxclines and are important for sulfur and nitrogen cycling. Here we used metagenomics and metabolic analyses to characterize a Sulfurimonas
The resulting files were then depleted of short reads (< 350 bp) and bacterial species identified using BlastN comparison to a quality controlled and manually curated database derived from the NCBI. Data was compiled and relative percentages of each bacterial identification were determined for each ...
Tindall BJ, Rosselló-Mora R, Busse H-J, Ludwig W, Kämpfer P (2010) Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60(1):249–266 ArticleCASPubMedGoogle Scholar Sangal V, Goodfellow M, Jones AL, Schwalbe EC, Blom J, Hoskisson PA...
The composition of the gut microbiota has recently been associated with health and disease, particularly with obesity. Some studies suggested a higher proportion of Firmicutes and a lower proportion of Bacteroidetes in obese compared to lean people; othe
These interbacterial signaling processes can be based on cell-cell contact, short range soluble mediators, AI-2, or nutri- tional stimuli [2,5-8]. In general, bacterial adaptation to the community lifestyle is accompanied by distinct pat- terns of gene and protein expression [9,10]. In S...