The system is a simple, offline, easy to install, end-user front-end to the new MetaMap Lite. Early adopters found it to be a quick starting-point to incorporate NER in their investigations.Ravi Teja BhupatirajuKin Wah FungOlivier Bodenreider...
metamaplite.bat [options] [<input file>|--] Example of invocation using Java VM directly when running from the public_mm_lite directory: $ java -cp target/metamaplite-3.6.2rc5-standalone.jar \ gov.nih.nlm.nls.ner.MetaMapLite \ --indexdir=data/ivf/strict \ --modelsdir=data/models...
Run metamaplite against a single filelist. This has the advantage of automatically re-running if a file causes an error (and skipping it in the next run).Each run will result in a newly-created filelist version. Default output format is json.mml-run-filelist --filelist /path/to/filelist....
The system is a simple, offline, easy to install, end-user front-end to the new MetaMap Lite. Early adopters found it to be a quick starting-point to incorporate NER in their investigations. The application of Named Entity Recognition (NER) has become pervasive. Biomedical researchers, who ...
We now support MetaMapLite. To use MetaMapLite, rather than MetaMap, create a MetaMapLite instance: >>> from pymetamap import MetaMapLite >>> mm = MetaMapLite.get_instance('/opt/public_mm_lite_3.6.2rc3/') Note:The MetaMap binary path and MetaMapLite home directory should be absolu...