We developed MetacodeR, an R package for easily parsing, manipulating, and plotting hierarchical data. To accomplish this, MetacodeR provides a function to parse most text-based formats that contain taxonomic classifications, taxon names, taxon IDs, or sequence IDs. This parsed data can then be ...
Metacoder is an R package for reading, plotting, and manipulating large taxonomic data sets, like those generated from modern high-throughput sequencing, like metabarcoding (i.e. amplification metagenomics, 16S metagenomics, etc). It provides a tree-based visualization called “heat trees” used to...