install.packages(c("devtools","curl")) ##Installs devtools and the MCPcounter dependancy 'curl' library(devtools) install_github("ebecht/MCPcounter",ref="master", subdir="Source") Examples on how to run the algorithm on your data are shown in the documentation?MCPcounter.estimate Releases No releases published Contributors3 ebecht FPetitprezFlorent Petitprez lovrotJohn Löv...
MCPcounter 包需要从 github上安装: library(devtools) install_github("ebecht/MCPcounter",ref = "master", subdir = "Source") 运行需要两个文件genes 和probesets : probesets <- read.table(curl("http://raw.githubusercontent.com/ebecht/MCPcounter/master/Signatures/probesets.txt"), sep = "\t"...
devtools::install_github('grst/immunedeconv') Citation If you use this package, please cite Sturm, G., Finotello F. et al. "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", bioRxiv,https://doi.org/10.1101/463828 ...
("http://raw.githubusercontent.com/ebecht/MCPcounter/master/Signatures/probesets.txt"),sep='\t',stringsAsFactors=FALSE,colClasses='character'), genes=read.table(curl("http://raw.githubusercontent.com/ebecht/MCPcounter/master/Signatures/genes.txt"),sep='\t',stringsAsFactors=FALSE,header=TRUE,...
学习一个R包——免疫浸润MCP-counter
这是个很常用的包,在我们公众号中多次提到,目前已经被引用200+次。 本包可以利用转录组数据量化异质组织中8个免疫细胞和2个基质细胞的绝对丰度。作者在后续的答疑中说明,转录组数据必须归一化。该包放在了github上,网址为:https://github.com/ebecht/MCPcounter ...
这是个很常用的包,在我们公众号中多次提到,目前已经被引用200+次。 本包可以利用转录组数据量化异质组织中8个免疫细胞和2个基质细胞的绝对丰度。作者在后续的答疑中说明,转录组数据必须归一化。该包放在了github上,网址为:https://github.com/ebecht/MCPcounter ...
("http://raw.githubusercontent.com/ebecht/MCPcounter/master/Signatures/probesets.txt"),sep="\t",stringsAsFactors=FALSE,colClasses="character")genes=read.table(curl("http://raw.githubusercontent.com/ebecht/MCPcounter/master/Signatures/genes.txt"),sep="\t",stringsAsFactors=FALSE,header=TRUE,...
table(curl('http://raw.githubusercontent.com/ebecht/MCPcounter/master/Signatures/probesets.txt'),sep='\t',stringsAsFactors=FALSE,colClasses='character'), genes=read.table(curl('http://raw.githubusercontent.com/ebecht/MCPcounter/master/Signatures/genes.txt'),sep='\t',stringsAsFactors=FALSE,...
载入MCPcounter,需要先下载curl包,并从github中加载MCPcounter包。 可以通过查看帮助文档,了解MCPcounter的数据要求和使用。 ##Installs devtools and the MCPcounter dependancy 'curl' #install.packages(c('devtools','curl')) library(curl) library(devtools) install_github('ebecht/MCPcounter',ref='master'...