The number of permutations is 1,000 by default and can be set with --nperm NPERM. The default output has the format: Sample NameNumber of MutationsSignature.1.observedSignature.1.pvalueSignature.2.observedSignature.2.pvalue TCGA.BH.A0EI 18 0.61 0 0.066 0.05 TCGA.E9.A22B 50 0.51 0 ...
@puzzlezaddictI've decided I'm going to try to build everything myself (with the help of my sister's boyfriend of course). My knowledge is still really basic, but I am enjoying learning. And, as we previously discussed, it would be great if I have the ability and kno...