markov clusteringbioinformaticsprotein sequence classificationunsupervised classificationsparse matrixIn this paper we propose a modified Markov clustering algorithm for efficient and accurate clustering of larg
That’s why a team of researchers from the Department of Energy’s (DOE’s) Lawrence Berkeley National Laboratory (Berkeley Lab) and Joint Genome Institute (JGI) took one of the most popular clustering approaches in modern biology—the Markov Clustering (MCL) algorithm—and modified it to run ...
RCL, fast multi-resolution consensus clustering Status and plans MCL Markov CLustering or the Markov CLuster algorithm, MCL is a method for clustering weighted or simple networks, a.k.a. graphs. It is accompanied in this source code by other network-related programs, one of which is RCL (res...
MCL is a flow-based graph clustering algorithm. LetG=(V,E) be a graph withn=|V| andm=|E|, andAbe the adjacency matrix ofGwhere self-loops for all nodes are added. The (i,j)th elementMijof the initial flow matrixMis defined as follows: Mij=Aij∑k=1nAkj. Intuitively,Mijcan be ...
Markov Clustering This module implements of the MCL algorithm in python. The MCL algorithm was developed by Stijn van Dongen at the University of Utrecht. Details of the algorithm can be found on theMCL homepage. Features Sparse matrix support ...
Local informationFuzzy c-means (FCM) clustering as one of the clustering method is widely used in image segmentation field, but some methods based on FCM are unable to obtain satisfactory performance for image segmentation under intense noise condition. This paper presents a novel local spatial ...
中国图象图形学报, 2012,17(12): 1554-1560. (SHE Lihuang,ZHONG Hua,ZHANG Shi. Fuzzy C-means clustering algorithm combined with Markov random field for brain MR image segmentation[J]. Journal of Image and Graphics, 2012,17(12):1554-1560.)...
Expected-conditional maximization (ECM) algorithmModel selectionRobust model-based clusteringThe Gaussian hidden Markov model (HMM) is widely considered for the analysis of heterogenous continuous multivariate longitudinal data. To robustify this approach with respect to possible elliptical heavy-tailed ...
An efficient two-way clustering algorithm was applied to both the genes and the tissues, revealing broad coherent patterns that suggest a high degree of organization underlying gene expression in these tissues. Coregulated families of genes clustered together, as demonstrated for the ribosomal proteins...
The most common training algorithm for the RBF network is a two-step hybrid learning algorithm: first, kernel positions and kernel widths are estimated using an unsupervised clustering algorithm, then a supervised least mean square algorithm is employed to determine the connection weights between the ...