|| 一鍵取得MA plot、volcano plot等多項互動美圖 || 在設定好各類參數後,點擊"Filter with setting Parameter " 就能得到互動圖! MA plot MA plot 展示兩組間 "基因表現量" 和 "Fold change" 的分佈, 圖的X軸為平均基因表現量 (Mean normalized count),Y軸為Fold change,紅色點表示 |Fold change| >2(...
mavolcanoplot(DataX,DataY,PValues)creates a scatter plot of gene expression data, plotting significance versus fold change of gene expression ratios of two data sets,DataXandDataY. It plots significance as the -log10(p-value) from the input,PValues. ...
Loess is a method of local regression that is based on MA plot, which normalizes the data by subtracting the difference between the arrays from the average mean difference across arrays (Cleveland and Devlin, 1988; From: Leveraging Biomedical and Healthcare Data, 2019 ...
MA and Volcano plots from data present in a limma derived topTableRaffaele A Calogero
I want to know how exactly the fold changes are calculated by mavolcanoplot(). It seems that the fold changes are not something simple like mean(Yreplicates)/mean(Xreplicates), at least not by my inspection of the input DataMatrix arrays. I assume it has to do with the p val...
不久前,北京大学肿瘤医院沈琳教授、鲁智豪教授和首都医科大学附属北京世纪坛医院张恒辉教授作为共同通讯作者在期刊Signal Transduction and Targeted Therapy上发表题为“Clinical efficacy and identification of factors confer resistance to afatinib ...
Fig. 13. A plot of Th/Yb vs Nb/Yb (after Pearce, 2008) for basalts and basalt-derived volcaniclastic-sedimentary rocks which form Package B. Abbreviations: E-MORB, enriched mid-ocean ridge basalt; N‑MORB, normal mid-ocean ridge basalt; OIB, ocean island basalt; PM, primitive mantle....
indices for the different constant ratios of compound vs.doxorubicin were determined by using the CompuSyn software to plot four to five data points to each ratio. CI values were calculated by means of the median-effect equation [10], where CI < 1, CI = 1, and CI > 1 represent synergism...
7. (a) Zr/P2O5 versus TiO2 plot used to re- veal the magma type. Field boundaries from Floyd & Winchester (1975) and Winchester & Floyd (1976). (b) Ti vs. Zr plot for the meta- igneous rocks of the Kadınhanı area. Field bound- aries from Pearce (1982) and Pharaoh & ...
Volcano plot of differentially expressed genes (DEGs) from the transcriptomes of MB and MA in Eriocheir sinensis.Min, HuiYuan, LiuChengwen, SongYingdong, LiGuohui, ShiZhaoxia, Cui