that can improve the accuracy of local ancestry inference in large pedigrees by: (1) using an existing algorithm to infer local ancestries for all individuals in a family, assuming (contrary to fact) they are unrelated, and (2) improving its accuracy by correcting inference errors using pedigr...
The easy and inexpensive application of local ancestry inference in breeding programmes will facilitate the monitoring of the genetic profile of individuals of interest, the tracking of the movement of genes from parents to offspring and the detection of hybrids and their origin....
Consequently, San- jiang cattle showed a proportion of four types of ancestry: Chinese indicine (0.556), East Asian taurine (0.332), Euro- pean taurine (0.068) and Indian indicine (0.044). Local ancestry inference of Sanjiang cattle Having established the level of taurine × indicine ...
Ancestry deconvolution includes obtaining unphased genotype data of an individual; phasing, using one or more processors, the unphased genotype data to generate phased haplotype data; using a learning machine to classify portions of the phased haplotype data as corresponding to specific ancestries respec...
2018. Estimating the timing of multiple admixture pulses during local ancestry inference. Genetics, 210(3): 1089-1107. P Medina,B Thornlow,RCDR Nielsen - 《Genetics A Periodical Record of Investigations Bearing on Heredity & Variation》 被引量: 0发表: 2018年 Estimating the Timing of Multiple ...
local_ancestry_afr_eurEn**xx 上传 Scripts used to perform 2-way local ancestry inference (European and African) and do a basic QC on the results 点赞(0) 踩踩(0) 反馈 所需:1 积分 电信网络下载 cpp_redis.build 2025-02-24 08:46:30 积分:1 paho.mqtt.build 2025-02-24 08:45:59 ...
1.) Infer local ancestry Run RFMix After RFMix input is generated, run RFMix. There is nice documentation on what all of the options mean here:https://sites.google.com/site/rfmixlocalancestryinference/. Here is an example run that I went through for 1000 Genomes: ...
Local ancestry inference (LAI) is focused on detecting the genetic ancestry of chromosomal segments in admixed individuals and has wide applications. In this work, we proposed a new LAI method based on population-specific single-nucleotide polymorphisms (SNPs) and applied it in the analysis of ad...
High Resolution Ancestry Deconvolution for Next Generation Genomic Data -G-Nomix Changes made by Embark The forward-backward result output is a tab separated file with the name .fb.tsv The first line is a comment line, that specifies the order of subpopulations: eg: #reference_panel_...
(2020)17proposed a capture array with approximately 60,000 ancestry informative markers for effectively determining the origins of captive chimpanzees in Africa, and this method was implemented in the European Association of Zoos and Aquaria Ex situ Programme. Fontsere et al. (2022)39performed ...