T0 <- Load10X_Spatial_change(data.dir = ".\\outs\\",filename = "filtered_feature_bc_matrix.h5") for (i in colnames((T0@images$slice1@coordinates))) { T0@images$slice1@coordinates[[i]] <- as.integer(T0@images$slice1@coordinates[[i]]) } SpatialDimPlot(T0,alpha = 0) 注:循环修...
2,filtered_feature_bc_matrix文件夹 + spatial文件夹(无 h5文件) data.dir = ".\\outs_noh5\\"T1 <- Load10X_Spatial_change(data.dir = data.dir,filename = "filtered_feature_bc_matrix")for (i in colnames((T1@images$slice1@coordinates))) {T1@images$slice1@coordinates[[i]] <- as.inte...
data.dir=".\\outs_onlyhires_h5\\"T2<-Load10X_Spatial_change(data.dir=data.dir,filename="filtered_feature_bc_matrix.h5",#slice="sli",image.name="tissue_hires_image.png")for(iincolnames((T2@images[[1]]@coordinates))){T2@images[[1]]@coordinates[[i]]<-as.integer(T2@images[[1]]@...
function (data.dir, filename = "filtered_feature_bc_matrix.h5", assay = "Spatial", slice = "slice1", filter.matrix = TRUE, to.upper = FALSE, ...) { if (length(x = data.dir) > 1) { warning("'Load10X_Spatial' accepts only one 'data.dir'", immediate. = TRUE) data.dir <-...
LN15_A1<-Load10X_Spatial(filedir,filename="filtered_feature_bc_matrix.h5", assay="Spatial",slice="LN15_A1",filter.matrix=TRUE) Error in Load10X_Spatial(filedir, filename = "filtered_feature_bc_matrix.h5", : Image must be an object of class 'VisiumV1'. ...
data.dir = ".\\outs_onlyhires_h5\\"T2 <- Load10X_Spatial_change(data.dir = data.dir,filename = "filtered_feature_bc_matrix.h5",#slice = "sli",image.name = "tissue_hires_image.png")for (i in colnames((T2@images[[1]]@coordinates))) {T2@images[[1]]@coordinates[[i]] <- as...
data.dir = ".\\outs_onlyhires_h5\\"T2 <- Load10X_Spatial_change(data.dir = data.dir,filename = "filtered_feature_bc_matrix.h5",#slice = "sli",image.name = "tissue_hires_image.png")for (i in colnames((T2@images[[1]]@coordinates))) {T2@images[[1]]@coordinates[[i]] <- as...