LIANA+ in R #168 opened Feb 15, 2025 by abadgerw 1 Installation issue on Google colab with GPU bug help wanted #167 opened Feb 14, 2025 by wgao688 2 liana multi df_to_lr function using precomputed pseudobulk Differential Expression results #165 opened Feb 11, 2025 by gianfi...
saezlab/liana-pyPublic NotificationsYou must be signed in to change notification settings Fork25 Star202 Code Issues29 Actions Projects Security Insights New issue Closed dbdimitrov I should update the MOFAcell tutorial: Cite published paper
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266 adata.uns[key_added] = liana_res File~/anaconda3/envs/env_liana_p311/lib/python3.11/site-packages/liana/method/sc/_liana_pipe.py:171, in liana_pipe(adata, groupby, resource_name, resource, interactions, groupby_pairs, expr_prop, min_cells, base, de_method, n_perms, seed, verbose...
File ~/miniconda3/lib/python3.9/site-packages/liana/method/sc/_liana_pipe.py:300, in _get_lr(adata, resource, groupby_pairs, relevant_cols, mat_mean, mat_max, de_method, base, verbose) 298 dedict[label]['zscores'] = temp.layers['scaled'].mean(axis=0) 299 if logfc_flag: --> ...
Is your feature request related to a problem? Please describe. Users sometimes run liana on raw or differently normalized/transformed data or forgets to setuse_raw=Falsewhich results inNaNorinf.values in logfc and specificity values. That would be nice to check the input values and warn users...
saezlab/liana-pyPublic NotificationsYou must be signed in to change notification settings Fork24 Star198 Code Issues27 Pull requests Actions Projects Security Insights Additional navigation options New issue Closed Hi, recently i am trying to follow the tutorial of "Intercellular Context Factorization wi...