Python for Bioinformatics is an essential resource for anyone looking to integrate programming into their biological research. As the field of bioinformatics continues to expand, the ability to analyze vast amounts of biological data becomes increasingly crucial. This book introduces bioinformatics, blendin...
awosome-bioinformatics Abstract: A curated list of resources for learning bioinformatics. Some of this repo resources were collected by BioInstaller project. You can use BioInstaller to directly download the source code or database files, or fetch the meta information by BioInstaller::get.meta()$...
Python lightaime/deep_gcns_torch Star1.2k Pytorch Repo for DeepGCNs (ICCV'2019 Oral, TPAMI'2021), DeeperGCN (arXiv'2020) and GNN1000(ICML'2021):https://www.deepgcns.org data-miningbioinformaticscomputer-visiondeep-learningcheminformaticssocial-networkpytorch3d-point-cloudsgraph-convolutional-networks...
Pycytominer is a user-friendly, open-source Python package that carries out key bioinformatics steps in image-based profiling. Erik Serrano ,Srinivas Niranj Chandrasekaran &Gregory P. Way Article 03 March 2025|Open Access Cell2fate infers RNA velocity modules to improve cell fate prediction ...
We present ilastik, an easy-to-use interactive tool that brings machine-learning-based (bio)image analysis to end users without substantial computational expertise. It contains pre-defined workflows for image segmentation, object classification, counting and tracking. Users adapt the workflows to the ...
InstantDL is an easy-to-use python package that can be executed by setting only two variables: the task and the data directory. For advanced users, twelve parameters can be set to adapt InstantDL to the specific task (see Methods). Moreover, different examples are provided in the ...
So far, several deep learning frameworks, such as the convolutional neural network (CNN), deep belief network (DBN), and recurrent neural network, have been applied in computer vision, speech recognition, natural language processing, audio recognition, and bioinformatics and have achieved excellent ...
Bioinformatics The Support vector machines are used for gene classification that allows researchers to differentiate between various proteins and identify biological problems and cancer cells. Text Categorization Used in training models that are used to classify the documents into different categories bas...
With the progress of machine learning (ML) in the past few decades, ML has become a prominent solution for different applications including image classification [1], text mining [2], bioinformatics [3,4], and activity recognition [5]. Learning accurate models requires generation of informative ...
data-sciencemachine-learningbioinformaticsgeneticstrajectory-generationmarkov-chainsmanifold-learningsingle-cell-genomicssingle-cell-rna-seqcell-fate-transitionsfuzzy-clustering-analysesrna-velocitycell-fate-determination UpdatedApr 7, 2025 Python nicola-decao/s-vae-pytorch ...