Using Kraken version 2.0.8-beta installed with conda. Maybe fail safes for such cases will be needed in the script? igordotmentioned this issueAug 23, 2020 jenniferlu717closed this ascompletedSep 10, 2020 mziegler12mentioned this issueNov 30, 2020 ...
kraken2-build --download-library viral -db kraken2_db rsync: link_stat "/all/GCF/003/034/835/GCF_003034835.1_ASM303483v1/GCF_003034835.1_ASM303483v1_genomic.fna.gz" (in genomes) failed: No such file or directory (2) rsync: link_stat "/all/GCF/001/611/645/GCF_001611645.5_ASM161164v5...
kraken_library里就是drep的MAG 建库 conda activate kraken2 for file in kraken_library/*.fa do kraken2-build --add-to-library $file --db kraken_database done mkdir kraken_database/taxonomy mv names.dmp kraken_database/taxonomy mv nodes.dmp kraken_database/taxonomy ## kraken2-build --build...