dataset also found that host sequences of the genus Veillonella were more abundant in cirrhosis patients [28], consistent with the higher association of this viral bin with individuals with cirrhosis. Discussion We have presented the development, validation, and ap- plication of VirFinder, a ...
robust and fast binary classifier. In this section, we describe the data used to build the classification model and to test its performance. We then describe the distinct computational pipeline ofk-mer usage. This is followed by the construction of a binary classifier...
We applied the VirFinder tool to study real human gut metagenomes of healthy and liver cirrhosis patients. Qin et al. [36] previously reported the alteration of human gut microbiomes associated with liver cirrhosis. Their analysis only focused on the bacterial microbiome by mapping reads to refere...
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B: Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008, 5 (7): 621-628. 10.1038/nmeth.1226. Article PubMed CAS Google Scholar Flintoft L: Non-coding RNA: Structure and function for lncRNAs. Nat Rev Genet...