The original data from high-throughput sequencing (Illumina NovaSeq 6000 System) was transformed into raw sequenced reads by the CASAVA base and stored in FASTQ format [37, 38]. These data have been submitted to the NCBI BioProject database. The NCBI SRA accession number for the data is ...
Public data used for taxonomic analysis and gene functional classification included the integrated NCBI-NR database, COG database and KEGG database. Non-redundant gene sequences were searched against the NCBI non-redundant protein database using BLASTP (v. 2.3.0). The taxonomic distribution of me...
In the Gene Expression Omnibus (GEO) database (http://www.ncbi.nlm.nih.gov/geo/), we selected GSE158055 for single-cell analysis and downloaded the sequencing data of the epithelial cells. Single-cell analysis was performed using the ‘Seurat’ package in the R (4.2.1). After standardizin...
The usual method for submitting sequence data is by the World Wide Web to either GenBank (via BankIt: http://www.ncbi.nlm.nih.gov/BankIt/), EMBL (via WebIn: http://www.ebi.ac.uk/subs/allsubs.html) or to DDBJ (via SAKURA: http://sakura.ddbj.nig.ac.jp/). Special types of ...
http://www.ncbi.nlm.nih.gov/pubmed/. However, please also note the caveats of citation recommendation as outlined above and in Sect. 5.3. Exceptions are [101, 174], which also use the citing paper’s author information besides the content. It should be noted that citation recommendation ca...
Gene accession numbers refer to genes or DNA sequences about which further information can be found in the database at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine. Elsevier authors wishing to enable other scientists to use the accession numbers cited...
Authors can refer to the Sex and Gender Equity in Research (SAGER) guidelines and the SAGER guidelines checklist. These offer systematic approaches to the use and editorial review of sex and gender information in study design, data analysis, outcome reporting, and research interpretation; however,...
In a systematic database search for novel MGCs, we identified several orthologs of known magnetosome genes in the recently released draft genome sequence of the culturable anoxygenic phototroph Rhodovastum atsumiense G2-11 [25]. This finding was unexpected as, after isolation of G2-11 from a...
If you are reporting an assembled gene/genome/peptide etc. then you must deposit the raw reads and the assembled sequence in the appropriate databases (e.g.NCBI archives). Authors are encouraged to extend the utility of their manuscripts with the inclusion of helpful meta-data so that published...
Compounds in CO that have been reported to have anti-RA activities in the published literature were also included. Collecting potential targets of active ingredients The obtained active ingredients were imported into the PubChem database (https://pubchem.ncbi.nlm.nih.gov/) to query the canonical...