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github安装 在github:jellyfish上通过源码安装。 4. jellyfish 运行 一般先用jellyfish count进行k-mer计数,然后用jellyfish histo对结果进行统计,获得k-mer的频数分布直方表sample.histo。 4.1. count —— k-mer计数 命令 jellyfish count -m 17 -s 10G -t 12 -C -o sample.jf <(zcat sample_1.fq.gz...
Jellyfish is freely available with MIT license at https://github.com/HautaniemiLab/jellyfish (JavaScript library) and https://github.com/HautaniemiLab/jellyfisher (R package).doi:10.1093/bioinformatics/btaf091Lavikka KariMaarala Altti Ilari...
也可以在github上下载,https://github.com/gmarcais/Jellyfish,里面有更多的详细介绍。 2.2 Jellyfish count 我们要用的是count 命令来进行K-mer计数,使用fastq文件在默认参数上和fasta文件没有区别,生成的hash结果为*.jf为后缀的二进制文件。 以count基本命令为例: ...
https://github.com/gmarcais/Jellyfish/releases 可以直接下载第二个,应该是二进制版本,可以直接使用,或者下载第一个自己编译 我这里下载第一个 wget https://github.com/gmarcais/Jellyfish/releases/download/v2.3.0/jellyfish-2.3.0.tar.gz tar -xzvf jellyfish-2.3.0.tar.gz ...
https://github.com/muirglacier/jellyfish/pull/555 In #555 a significant change was done to "@muirglacier/jellyfish-wallet-mnemonic". Part of the BIP32 specification literature defines the use of HMAC-SHA512. "Calculate I = HMAC-SHA512(Key = "Bitcoin seed", Data = S)". The Key in ...
0.1.9•Public• Published3 years ago @muirglacier/jellyfish-wallet-encrypted Prior-art: Dependents (0) npm i@muirglacier/jellyfish-wallet-encrypted Repository github.com/muirglacier/jellyfish Homepage github.com/muirglacier/jellyfish#readme ...
2.0版本最大的优化是不再限制K-mers的长度。 下载及使用见: http://www.genome.umd.edu/jellyfish.html#Release Github上也有说明文档: https://github.com/gmarcais/Jellyfish/tree/develop/swig 目前jellyfish也已经被写入到了Python, Ruby和Perl中。 —END—...
也可以在github上下载,https://github.com/gmarcais/Jellyfish,里面有更多的详细介绍。 2.2 Jellyfish count 我们要用的是count 命令来进行K-mer计数,使用fastq文件在默认参数上和fasta文件没有区别,生成的hash结果为*.jf为后缀的二进制文件。 以count基本命令为例: ...