cp src/main/java com.github.lindenb.jbwa.jni.Example2 \ human_g1k_v37.fasta tmp1.fq tmp2.fq HWI-1KL149:20:C1CU7ACXX:4:1101:13638:2192 121 1 229568362 37 13S87M = 229568362 0 GCTCTTCCGATCTGGCACGTTGAAGGTCTCAAACATGATCTGGGTCATCTTCTCGCGGTTGGCCTTGGGATTGAGGGGGGCCTCGGTGAGCAGGGNG...
cp src/main/java com.github.lindenb.jbwa.jni.Example2 \ human_g1k_v37.fasta tmp1.fq tmp2.fq HWI-1KL149:20:C1CU7ACXX:4:1101:13638:2192 121 1 229568362 37 13S87M = 229568362 0 GCTCTTCCGATCTGGCACGTTGAAGGTCTCAAACATGATCTGGGTCATCTTCTCGCGGTTGGCCTTGGGATTGAGGGGGGCCTCGGTGAGCAGGGNG...
IGGJJJJJIJJJJJJJJIIHJJJJJIIJJJJJJJIIJIJIHFHHHFFFFFCCC NM:i:0 AS:i:100 XS:i:0 HWI-1KL149:20:C1CU7ACXX:4:1101:11401:2488 97 3 38763808 60 100M = 38763855 147 CCACNATACGGTAGCAAGTCTTGCGCACCTGCCAGCCCACATCCCATGGACTCTTCGTGGTATCCAGTTTGCAGCAGGGACAGTGGCGAATGCATCCTGT CCCF#4ADHHHHHJJJJJJ...