//tide.dfci.harvard.edu/; cBioPortal, http://www.cbioportal.org; GEPIA2, http://gepia2.cancer-pku.cn/; UALCAN, http://ualcan.path.uab.edu/analysis-prot.html; STRING database, https://string-db.org/; ROC plotter service, http://www.rocplot.org/; HPA, https://www.proteinatlas....
We integrated data from EPIN promoters with differential gene expression (DE) from two sources. DE analysis on prostate cancer tumor versus normal was downloaded from GEPIA:http://gepia2.cancer-pku.cn/#degenes, which use the TCGA and GTEx projects databases to compare gene expression between tum...
GEPIA2 (Gene Expression Profiling Interactive analysis: http://gepia2.cancer-pku.cn/) is a server that allows users to analyse the differential expression of genes in samples from TCGA and GTEx data sets. Here, we employed this tool to analyse the expression of different CGB isoforms in ...
T. asperellumACCC30536 was obtained from the Agricultural Culture Collection of China. The five phytopathogens wereR. solani,F. oxysporum,S. sclerotiorum,A. alternataandC. chrysosperma, and they were stored at the Laboratory of Forestry Protection, Northeast Forestry University, Harbin, China.T. a...
OCT4 is a master transcription factor that regulates the pluripotency of pluripotent stem cells and cancer stem cells along with other factors, including SOX2, KLF4, and C-MYC. Three different transcripts, OCT4A, OCT4B, and OCT4B1, are known to be genera
The prediction analysis of gene structure was carried out using GSDS (http://gsds.cbi.pku.edu.cn/) using the DNA and cDNA sequences of each predictive HvLTP and HtLTP gene from the barley and Qingke genomes. Chromosomal mapping and gene duplications ...
Gene Structure and Phylogenetic Analysis of HvSPL Genes. The Gene Structure Display Server program (http://gsds.cbi.pku.edu.cn/index.php) was used to predict the exon/intron structure of each HvSPL gene by comparing their coding and genomic sequences. SPL sequences of A. thaliana were...
Barley (Hordeum vulgareL.) is a widely cultivated cereal grain. Cereal inflorescences are known as spikes. Each spike is composed of multiple spikelets formed directly on the main axis1. During domestication, both the yield and the architecture of cereal plants have been modified. Plant architectu...
To gain a comprehensive and non-redundant list of proteins containing the NAM domain in moso bamboo, the NAC protein sequences were downloaded from the PlantTFDB (http://planttfdb.cbi.pku.edu.cn/index.php) [62]. To identify the members of the NAC family in moso bamboo, we performed BLAS...
The GRAS protein sequences inA. thalianaandJ. regia(Table S4) were downloaded from the PlantTFDB website (http://planttfdb.cbi.pku.edu.cn/, accessed on 19 February 2024). The phylogenetic tree was constructed through MEGA 11 and visualized with the iTOL online phylogeny tool (https://itol...