Design was performed automatically using PrimerX (http://www.bioinformatics.org/primerx/) and the obtained sequences were as follows: E495A Fw 5′-GACAATACCATTGAAGCCGCTGGTACCGATCGTTTGAATG-3′ and E495A Rv 5′- CATTCAAACGATCGGTACCAGCGGCTTCAATGGTATTGTC-3′; E495G Fw 5′- GACAATACCAT...
and an extensive search for PH and a beneficial signature was performed. We discovered a number of PH features within the genome ofL. plantarumIS-10506 based on the general annotation, including various antibiotic resistant genes (AMR); however, with a few exceptions, bioinformatics tools specifical...
Automated preprocessing methods are critically needed to process the large publicly-available EEG databases, but the optimal approach remains unknown because we lack data quality metrics to compare them. Here, we designed a simple yet robust EEG data qua
The combination of genetic and bioinformatics information available from known food allergens applied to foods developed from genetically modified crops to avoid the inadvertent introduction of allergens into foods should pose no significant allergenic concern to individuals with a genetic predisposition to ...
MT: Bioinformatics neoantigen neoantigen prediction pipeline neoantigen immune response score NAIRscore quality of immune response to neoantigens multiple myeloma overall-survival prediction Introduction Multiple myeloma (MM) is the second most frequent hematological malignancy as characterized by the clonal expa...
Genetic mapping of sensitivity to the Pyrenophora tritici-repentis effector ToxB allowed development of a diagnostic genetic marker, and investigation of w
2006. The new bioinformatics: integrating ecological data from the gene to the biosphere. Annu Rev Ecol Evol Syst 37:519–44. Article Google Scholar Keller M, Schimel DS, Hargrove WW, Hoffman FM. 2008. A continental strategy for the National Ecological Observatory Network. Front Ecol Environ ...
Using bioinformatics and proteome data available on ToxoDB, we determined that the protein product of this tartrolon E responsive gene (trg) has multiple transmembrane domains, a phosphorylation site, and localizes to the plasma membrane. Deletion of trg in a luciferase-expressing T. gondii strain...
BMC Bioinformatics (2023)Download PDF Sections Figures References Abstract Introduction Materials and methods Results Discussion Conclusion Data availability References Funding Author information Ethics declarations Additional information Rights and permissions About this article This article is cited by Advertisemen...
The used set-level technique is capable of combining the benefits of the LMM and the aggregation methods to get a good measure for the set-level significances. However, it is still affected by some of the common biases of aggregation techniques, namely the ambiguity of set definitions, and ...