IntEnz is the name for the Integrated relational Enzyme database and is the official version of the Enzyme Nomenclature. The Enzyme Nomenclature comprises recommendations of the Nomenclature Committee of the International Union of Bio chemistry and Molecular Biology (NC-IUBMB) on the nomenclature and ...
It is created by extracting and integrating various online resources to provide the true and reliable data and implemented by MySQL relational database through user friendly web interfaces using CGI Perl. Flexible search options are there for data extraction and exploration. To summarize, sequence, ...
decomposition of the entry in terms of distinct polymer, branched (e.g., oligosaccharide), and non-polymer molecular entities (e.g., small-molecule ligands such as co-factos and enzyme inhibitors); and the observed atomic structure instances of these molecular entities in the deposited data set...
The first benchmark (DS1) contains 548 drugs, 97168 interactions, and eight types of similarities based on substructure data, target data, enzyme data, transporter data, pathway data, indication data, side effect data, and offside effect data17. The second benchmark (DS2) contains 707 drugs,...
Additionally other genomic relational or object-oriented knowledge base or data sources may be network-accessed, such as GenBank, Unigene, LocusLink, Homologene, Ensemble, GoldenPath, or NCICB Cancer Genome Anatomy Project (CGAP). Such information may be accessed using ontology-based interfaces tha...
IntEnz, the integrated relational enzyme database. Nucl. Acids Res. 32, D434- D437.Fleischmann A, Darsow M, Degtyarenko K, Fleischmann W, Boyce S, Axelsen KB, Bairoch A, Schomburg D, Tipton KF, Apweiler R. (2004) IntEnz, the integrated relational enzyme database. Nucleic Acids Res....
The 3-D structure of a folate-dependent dehydrogenase/cyclohydrolase bifunctional enzyme at 1.5 å resolution. Structure. 1998;6:173–82. Download references Acknowledgements We thank Mr. Kazuki Nagasawa for helping to implement the MEGADOCK-Web database system and Dr. Nobuyuki Uchikoga for ...
The pathway-gene, disease-gene, drug-gene, organ-gene, pathway-disease, pathway-drug, pathway-organ, disease-drug, organ-disease, organ-drug tables enable users to query the database with different IDs. Figure 7 Relational Metadata Model. The datasets derived by the data generation pipeline ...
Cancer is a complex disease where various types of molecular aberrations drive the development and progression of malignancies. Large-scale screenings of multiple types of molecular aberrations (e.g., mutations, copy number variations, DNA methylations,