LTR_retriever is installation-free but requires dependencies: TRF, BLAST+, BLAST or CD-HIT, HMMER, RepeatMasker, and TEsorter. You may specify the path to these programs in the command line (runLTR_retriever -hfor details) or install them in the following ways: ...
alignment.) This is the mode that can be used to create a database ofk-graphlets that can act as seeds for future implementations of an "extend" algorithm to produce local alignments with more thanknodes. (Note, however, that while BLAST can produce anexhaustivelist of allk-mers in a ...
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LTR_retriever is installation-free but requires dependencies: TRF, BLAST+, BLAST or CD-HIT, HMMER, RepeatMasker, and TEsorter. You may specify the path to these programs in the command line (runLTR_retriever -hfor details) or install them in the following ways: ...