Taxonomy allows to express the same vocabulary among a distributed set of users and organisations.Taxonomies that can be used in MISP and other information sharing tool, are expressed in Machine Tags (Triple Tags). A machine tag is composed of a namespace (MUST), a predicate (MUST) and an...
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For each species of mosquito, we considered the proportion of blood meal records per taxonomic class of hosts to be a measure of the species host associations, and placed unsampled species into our dated phylogeny using a birth-death process model and current taxonomy36. Mosquitoes take blood ...
Mushrooms in the basidiomycete family Amanitaceae are very important both economically and ecologically. However, the delimitation of the family is still controversial, in part due to limited taxon sampling and in part because of insufficient gene fragment employed for molecular phylogenetic analyses. Fu...
Known CRC-associated microbial taxa were obtained from the gutMDisorder24 (http://bio-annotation.cn/gutMDisorder) database with parameters: Species=Human, Condition=Colorectal Neoplasms (distal cancer), Sequencing Technology=Whole metagenomic sequencing and Taxonomy Rank=species. The resulting list of ...
Taxonomy information was also added directly to the merged cluster file using SAT aln_add_taxonomy. Cluster purity analysis To determine the structural consistency of the clusters, all clusters with at least 100 members were selected for analysis. DALI was used to align the cluster representative ...
(2018). The family Amanitaceae: molecular phylogeny, higher-rank taxonomy and the species in China. Fungal Diversity 91: 5-230.Cui YY, Cai Q, Tang LP, Liu JW, Yang ZL. The family Amanitaceae: molecular phylogeny, higher-rank taxonomy and the species in China. Fungal Divers. 2018;...
The taxonomy of each 16S rRNA gene sequence was analyzed by Ribosomal Database Project Classifier algorithm against the Silva (SSU123) 16S rRNA database using confidence threshold of 90%. Calculation The basal endogenous losses of fat and fatty acids were calculated from pigs fed the fat-free ...
As such, the fields of taxonomy and systematics, which have been largely based on phenotypic traits and/or small sets of genetic markers, are fundamental for the protection of biodiversity. However, with a growing ability to characterize genome-wide variation, we have become increasingly aware ...
The International Committee on Taxonomy of Viruses (ICTV) oversees the development of hierarchical virus tax- onomy according to the rank structure introduced in 1970 and expanded on several occasions [2]. Currently, it encom- passes five ranks, including Order, Family, Subfamily, Genus and ...