Michigan Imputation Server:基因型填充的在线工具 得益于分析软件运行速度的不断提高,硬件资源消耗的不断优化,基因型填充这一计算量巨大的任务也出现了web服务,Michigan Imputation Server就是其中之一,网址如下 https://imputationserver.sph.umich.edu/index.html 采用Eagle进行pre-phasing, minimac4进行填充的分析策略...
得益于分析软件运行速度的不断提高,硬件资源消耗的不断优化,基因型填充这一计算量巨大的任务也出现了web服务,Michigan Imputation Server就是其中之一,网址如下 https://imputationserver.sph.umich.edu/index.html 采用Eagle进行pre-phasing, minimac4进行填充的分析策略,保证了运行速度。该平台支持hg19...
Michigan Imputation Server consists of several parallelized pipeline steps: Quality Control QC Report Phasing and Imputation Compression and Encryption Documentation The documentation is available athttp://imputationserver.readthedocs.io. Citation Please cite this paper if you use Michigan Imputation Server: ...
1 进入Michigan Imputation Server Michigan Imputation Server网站链接:https://imputationserver.sph.umich.edu/index.html#!pages/home 进入该网站,进行注册。 注册完以后,接下来准备imputation需要的输入文件 2 准备imputation需要的输入文件 Michigan Imputation Server网站只接受压缩包的vcf格式(vcf.gz),故需要先将手...
ChinaMAP Imputation Serveris a genotype imputation server utilizing the ChinaMAP reference panel constructed from the China Metabolic Analytics Project (ChinaMAP) WGS dataset. The users can upload their unphased genotypes to the server and receive the phased and imputed genotypes in return. The haploty...
在全基因组关联分析中,处理芯片数据时,必须走的一个流程就是基因型数据填充(imputation)。 当然,如果你拿到的是全测序的数据,请忽略这一步。 下面直奔主题,怎么在网页版进行基因型填充。 1 进入Michigan Imputation Server Michigan Imputation Server网站链接:https://imputationserver.sph.umich.edu/index.html...
1 进入Michigan Imputation Server Michigan Imputation Server网站链接:https://imputationserver.sph.umich.edu/index.html#!pages/home 进入该网站,进行注册。 注册完以后,接下来准备imputation需要的输入文件 2 准备imputation需要的输入文件 Michigan Imputation Server网站只接受压缩包的vcf格式(vcf.gz),故需要先将手...
最近又搜索了下SNP imputation,发现随着中国人多个万人基因组项目的完成,我们自己的参考也已经建立,但是一般只局限在课题组内部,不公开,只提供了在线填充服务。不过,这也是极好的,如果样本不多可以考虑用一下,暂时发现有3个,基本上都类似于Michigan Imputation Server的模式。
Merge branch 'main' of github.com:genepi/nf-imputationserver Publish Docs #31: Commit 63b2014 pushed by seppinho main September 28, 2024 09:33 51s Update README.md Publish Docs #30: Commit da7b7fe pushed by seppinho main September 27, 2024 19:40 55s Prepare release v2.0...
Accurate genotype imputation requires large-scale reference panel datasets. When conducting genotype imputation on the Japanese population, researchers can use such datasets under collaborative studies or controlled access conditions in public databases. We developed the NBDC-DDBJ imputation server, which ...