RNA水平,比对之后找microRNA(病毒利用宿主中的蛋白质,制造自己的microRNA,对付病毒本身的免疫反应),gene expression:EGO;ENCODE;GTEx(人类基因在人体上的表达区域),RNA修饰。 蛋白水平:蛋白结构PDB;UniProt;domain(NCBI&smart&ExPay) 多个gene 多序列比对是有多种解的,clustalx,可以在合理知识储备下对序列进行匹配。...
atlas-gene-annotation-manipulation atlas-metadata-validator atlas atropos attotree augur augustus auriclass auspice authentict autodock autogenes autogrid autolog automappa autometa aviary avro-cwl avro-python2 axiome azure-cli b2b-utils b2btools bacgwasim backspinpy bacpage bacphlip bact...
Ara.bowtie.3.ebwt Ara.bowtie.rev.2.ebwt TAIR10.fa nohup bowtie -S /data4/gene/data/yhu/cssun/ref/Ara.bowtie.file/Ara.bowtie /data4/gene/data/yhu/cssun/huyue_output_SRR1534512.fastq > SRR1534512.sam 2>bowtie.log & # -S + 索引文件夹 + trimommatic处理后序列文件位置,sam文件...
Manual curation of genomic annotations, e.g., gene lists, CNV or SV calls, novel transcripts Merging and curation of multiple BED files De-novo authoring of multi-layer interval sets and many more. Installation Install java 1.8 (see here for a discussion on how to install java 8 on MacOS...
Immunoglobulin variable-region gene mutational lineage tree analysis: Application to autoimmune diseases Lineage trees have frequently been drawn to illustrate diversification, via somatic hypermutation (SHM), of immunoglobulin variable-region ( IGV) genes. In... A Steiman-Shimony,H Edelman,M Barak,.....
data(geneModels)grtrack<-GeneRegionTrack(geneModels,genome="hg38",chromosome=chr2,name="Gene Model")plotTracks(list(idTrack,gtrack,atrack1,grtrack),sizes=c(1,1,0.5,1))#这里的sizes是用来定义每个track的大小的 image.png 我感觉我现在画图的这个基因没有被很好的注释,所以这张图有点翻车。