RNA-seqRNA-seqThroughout their lifetime RNA molecules interact with a variety of (). control by regulating splicing, polyadenylation, editing, , stability, and of RNA. There are ~1500 RBPs encoded by the genome and recent studies have detected ~1100 directly interacting with polyadenylated RNA...
circRIP: An accurate tool for identifying circRNA-RBP interaction 1. requisites pysam (0.14.1) pandas (1.0.3) featureCounts (v1.6.1) gtfToGenePred bedtools (v2.26.0) STAR (2.7.5a) bowtie2 (2.4.2) 2. Identify circRNA from IP/Input ...
The first distinction is made between editing in intronic and exonic regions. RNA background editing rates would be expected to differ across intronic and exonic regions depending on where in the cell and at what point during pre-mRNA processing editing occurs. For example, a cytoplasmic RBP migh...