the syntenic maps were analyzed to compare PgPLs with their homologs. The number of homologous pairs of phospholipases between pearl millet and various species, including rice, sorghum, finger millet, and foxtail millet, were found to be 17, 22, 19, and 26, respectively. These results indicat...
We seeded HHsearch with the known bacterial TULIPs: P47, OrfX2 and YceB, searching for homologous families. HHsearch predicts homology by comparing multiple sequence alignments (MSAs) of the query with libraries of MSAs covering PDB, Pfam and proteomes of model organisms. P47 and OrfX2 produced...
The expression profiles of 39 candidate transcripts encoding the key enzymes for secoiridoid biosynthesis were examined in different S. mussotii tissues, validated by qRT- PCR, and compared with the homologous genes from S. japonica, a species in the same family, unveiling the gene expression, ...
The process comprised submitting the ligand’s chemical structures to the SwissADME server, which computed and produced data on significant physiochemical properties. According to Lipinski's rule of five, a compound is considered more likely to exhibit drug-like properties if it satisfies at least ...
RepeatsDB 2.0: improved annotation, classification , search and visualization of repeat protein structures. Nucleic Acids Res. 2017;(D1):D308-D312. doi:10.1093/nar/gkw1136 MALIDUP: a database of proteins with homologous domains originated from internal duplication. Cheng H, Kim B, Grishin N ...
Homology/InsertionSequence: Sequence of the homologous sequence or insertion at the breakpoint. If split reads are not found, this column is set to None. If the size is 0, then this column is empty.3. Cycles files ({out}_amplicon{id}_cycle.txt)This...
As with other hormones, GA action relies on its perception by its receptor(s). While in rice there is only one GA receptor encoded by the gene GIBBERELLIN-INSENSITIVE DWARF1 (GID1), the model plantArabidopsis thalianahas three genes encoding GID1 homologous proteins, GID1A-C; collectively, ...
Protein kinase B (PknB) is a transmembrane serine/threonine protein kinase that acts as an essential regulator of mycobacterial growth and division. The PknB extracellular domain (ECD) consists of four repeats homologous to penicillin-binding protein and serine/threonine kinase associated (PASTA) ...
Restriction fragment length polymorphism (RFLP) is a method for identifying bacterial strains using unique fingerprints which relies on the presence of variations (polymorphisms) in homologous DNA sequences. This PCR-based method employs restriction enzymes, which can recognize and cut amplified DNA (PC...
The framework of the AlphaFold is based on a deep two-dimensional convolutional residual network that enables this method to create high-accuracy structures even under sequences with fewer homologous sequences. I-TASSER is developed for automated protein structure prediction, which performs the model ...