sudo yum install zlib-devel bzip2-devel xz-devel 3. 从官方渠道下载htslib源代码 htslib 的源代码托管在 GitHub 上。你可以使用 git 来克隆仓库,或者下载源代码压缩包。 使用git 克隆仓库: bash git clone --recursive https://github.com/samtools/htslib.git cd htslib 或者,下载源代码压缩包(从 GitHub...
# 指定安装路径./configure--prefix=/home/test/htslibmakemakeinstall 会在/home/test/htslib路径下生成新的文件夹{share、lib、include、bin}等。 二、添加环境变量 1、添加动态链接库 需要将对应路径添加到环境中,或者拷贝至动态链接库的路径下。 exportLD_LIBRARY_PATH=/home/test/htslib:$LD_LIBRARY_PATH ...
sudo apt-get install libncurses5-dev 1. 之后就可以了。 正确安装指令: (1).正确安装(一)htslib并make install、 (2).安装配置: 在samtool同级目录: git clone git://git.sv.gnu.org/autoconf-archive.git 1. (3) 安装automake和libncurses5-dev: sudo apt-get install automake 1. sudo apt-get ...
sudo make install 3.如何读取BAM文件? -在使用htslib读取BAM文件之前,你需要打开一个输入文件并创建一个samFile结构体。下面是一个读取BAM文件并打印其中的一些记录信息的示例代码: c #include <htslib/sam.h> int main() { samFile *inputFile = sam_open("input.bam", "r"); bam_hdr_t *header = ...
Ubuntu Linux) or zlib-devel (on RPM-based Linux distributions) is installed. FAILED. This error must be resolved in order to build HTSlib successfully. 1. 2. 3. 4. 5. 6. 解决办法: hadoop@Mcnode6:~/cloud/adam/xubo/htslib$ sudo apt-get install zlib1g-dev ...
INSTALL_LIB = $(INSTALL_DATA) INSTALL_MAN = $(INSTALL_DATA) INSTALL_PROGRAM = $(INSTALL) # Set by config.mk if plugins are enabled plugindir = BUILT_PROGRAMS = \ bgzip \ htsfile \ tabix BUILT_TEST_PROGRAMS = \ test/hts_endian \ test/fieldarith \ test/hfile \ ...
autoreconf -i # Build the configure script and install files it uses ./configure # Optional but recommended, for choosing extra functionality make make install Citing Please cite this paper when using HTSlib for your publications. HTSlib: C library for reading/writing high-throughput sequencing data...
INSTALL_LIB = $(INSTALL) -m $(LIB_PERM) INSTALL_MAN = $(INSTALL_DATA) INSTALL_PROGRAM = $(INSTALL) # Set by config.mk if plugins are enabled plugindir = BUILT_PROGRAMS = \ annot-tsv \ bgzip \ htsfile \ tabix BUILT...
configure: error: HTSlib development files not found 002、解决方法,安装htslib wget https://github.com/samtools/htslib/releases/download/1.16/htslib-1.16.tar.bz2 tar -xzvf htslib-1.16.tar.bz2cd htslib-1.16/autoreconf-i ./configure make make install...
install: libhts.a $(BUILT_PROGRAMS) $(BUILT_PLUGINS) installdirs install-$(SHLIB_FLAVOUR) install-pkgconfig $(INSTALL_PROGRAM) $(BUILT_PROGRAMS) $(DESTDIR)$(bindir) if test -n "$(BUILT_PLUGINS)"; then $(INSTALL_PROGRAM) $(BUILT_PLUGINS) $(DESTDIR)$(plugindir); fi $(INSTALL_...