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The C library has been used directly by an estimated 900 GitHub projects and has been incorporated into Perl, Python, Rust, and R, significantly expanding the number of uses via other languages. HTSlib is open source and is freely available from htslib.org under MIT/BSD license.}", issn =...
C library for high-throughput sequencing data formats - GitHub - xtmgah/htslib: C library for high-throughput sequencing data formats
The C library has been used directly by an estimated 900 GitHub projects and has been incorporated into Perl, Python, Rust, and R, significantly expanding the number of uses via other languages. HTSlib is open source and is freely available from htslib.org under MIT/BSD license.}", issn =...
addIncludePath(zights.path("htslib/cram")); your_build.linkLibrary(zights.artifact("hts")); Also, don't forget to add zights to the dependencies in your build.zig.zon file: zig fetch --save https://github.com/kcleal/zights/archive/refs/tags/v0.0.1.tar.gz...
Widespread adoption has seen HTSlib downloaded \\>1 million times from GitHub and conda. The C library has been used directly by an estimated 900 GitHub projects and has been incorporated into Perl, Python, Rust, and R, significantly expanding the number of uses via other languages. HTSlib...
PR #10: Pull request #1 synchronize by martin-g February 17, 2025 14:46 14s ci: GHA improvements PR #9: Pull request #1 synchronize by martin-g February 17, 2025 14:01 11s ci: GHA improvements PR #8: Pull request #1 synchronize by martin-g February 17, 2025 13:54 10s...
Releases v0.47.1 v0.47.1Compare github-actions released this 12 Nov 14:33 v0.47.1 fc8ab72 0.47.1 (2024-11-12) Bug Fixes allow leading deletions in read_pos method of CigarStringView. (#447) (2986713) Assets 2 Source code (zip) 2024-11-12T14:33:10Z Source code (tar.gz) ...
CommitsBranch selector master User selector ghuls DatepickerAll time Commit History Commits on Nov 12, 2024 fix: return error when bgzf_open fails to open a file (#444) ghulsand johanneskoesterauthoredNov 12, 2024 9bda5f7 Footer © 2024 GitHub, Inc. Footer navigation Terms Privacy ...
git clone --recursive https://github.com/brentp/cyvcf2 pip install -r requirements.txt # sometimes it can be required to remove old files: # python setup.py clean_ext CYVCF2_HTSLIB_MODE=BUILTIN CYTHONIZE=1 python setup.py install # or to use a system htslib.so CYVCF2_HTSLIB_MODE=...