Briefly, shotgun RNA sequencing reads for the viral genome from the virus that escaped during the viral evolution experiment were aligned to the reference sequence for the HPIV3 expressing mCherry (GenBank accession OP821798) using bwa-mem v0.7.17-r1188 (https://arxiv.org/abs/1303.3997), ...
NCBI contains all publicly available nucleotide and protein sequences. Presently, all records in GenBank NCBI are generated from direct submission to the DNA sequence databases from the original authors, who volunteer their records to make the data publicly available or do so as part of the ...
It is commonly assumed that a heterotrophic ancestor of the supergroup Archaeplastida/Plantae engulfed a cyanobacterium that was transformed into a primary plastid; however, it is still unclear how nuclear-encoded proteins initially were imported into th
Complete human adenovirus genome sequences were extracted from GenBank. Quantization of perfectly matching nucleotide motifs was done using the BLAST Web-server at NCBI [44]. Full size image For different human adenoviruses, we identified 47-106 perfectly matched 21 nt-long motifs, 16-44 22 nt-...
Taxonomic assignments of the sequences were made by pairwise comparisons with other sequences deposited in the GenBank of the National Center for Biotechnology Information (NCBI) (http://www.ncbi.nlm.nih.gov/, accessed on 8 May 2021) using the Basic Local Alignment Search Tool (BLAST) to ...
lactiflora, with only a few nucleotide sequences in the GenBank. Therefore, it is of both theoretical and practical values to study the molecular genetics underlying the Ca-mediated responses using high-throughput technologies, particularly the prevalent deep-sequencing technology. For non-model plants...