HiC_tools是一个用于研究蛋白质相互作用的开源软件包,它提供了许多工具和功能来帮助研究人员分析蛋白质之间的相互作用。这个软件包的主要特点是它的灵活性和可扩展性,使得研究人员可以方便地处理大量的数据并找到重要的相互作用模式。 HiC_tools的核心功能包括蛋白质相互作用网络的构建、分析以及可视化。它可以自动从实验...
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Python scripts wrapping other tools.Table 1 summarizes functionality of existing tools. https://www.genomegitar.org/https://github.com/Zhong-Lab-UCSD/HiCtool Calandrelli, Riccardo, Qiuyang Wu, Jihong Guan, and Sheng Zhong. “GITAR: An Open Source Tool for Analysis and Visualization of Hi-C ...
Results:We present HiCmapTools, a tool for biologists to efficiently calculate and analyze HiC maps. The complete program provides multi-query modes and analysis tools. We have validated its utility on two real biological questions: TAD loop and TAD intra-density. Conclusions:HiCmapTools supports ...
$ dlohic --help Usage: dlohic [OPTIONS] COMMAND [ARGS]... DLO HiC Tools command line interface. Options: --log-file TEXT The log file, default output to stdout. --debug / --no-debug If debug will print all information, default False. --version Show the version and exit. --help ...
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conf-hicmap_1.yml等很多 trackc: - ax: t1 height: 2 track_type: hicmap track_para: mat: method: extractContactRegions clr: /path/GSM4417639_SK-N-DZ_C6BC81F2_b38d5.mcool::/resolutions/5120000 row_regions: - chr6 - chr8 mapC: ...