HiCRep computes the reproducibility score for a pair of chromosomal matrices using the function get.scc(). The code below demonstrates the analysis for a example data: 1. Compute one chromosome # Read the HiC contact maps, which are in the squared matrix format mat1 = read.table(“Example....
Usage: hicreppy scc [OPTIONS] COOL1 COOL2 Compute the stratum-adjusted correlation coefficient for input matrices Options: -v, --h-value INTEGER Value of the smoothing parameter h to use. Should be an integer value >= 0. [default: 10] -m, --max-dist INTEGER Maximum distance at which ...
HiCRep computes the reproducibility score for a pair of chromosomal matrices using the function get.scc(). The code below demonstrates the analysis for a example data: 1. Compute one chromosome # Read the HiC contact maps, which are in the squared matrix format mat1 = read.table(“Example....