The hclust function is based on Fortran code contributed to STATLIB by F. Murtagh. 参考 Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988). The New S Language. Wadsworth & Brooks/Cole. (S version.) Everitt, B. (1974). Cluster Analysis. London: Heinemann Educ. Books. ...
wssplot <- function(data,nc=15,seed=1234){ wss <- (nrow(data)-1) * sum(apply(data,2,var)) for (i in 2:nc) { set.seed(seed) wss[i] <- sum(kmeans(data,centers = i)$withinss) } plot(1:nc,wss,type = 'b',xlab = 'Number of Clusters',ylab = 'Within groups sum of s...
Since in this case you already know that there could be only three types of wheat you will choose the number of clusters to be k = 3, or as you can see in the dendrogram h = 3 you get three clusters. You will use R's cutree() function to cut the tree with hclust_avg as one...
针对您遇到的hclust函数中的错误error in hclust(d, method = method) : na/nan/inf in foreign function call (arg 6),这个问题通常是由于输入的距离矩阵d中存在NA(缺失值)、NaN(非数字值)或Inf(无穷大值)导致的。以下是根据您提供的提示,逐步解决问题的步骤和代码示例: 1. 检查d中是否存在NA/NaN/Inf值...
在利用Xib开发的过程，UILabel可以直接在Xib上设置，所见即所得非常方便，但是如果颜色值需要改变就需要一...
(& small) # and *beside* 1st one nD <- dev.cur() # to be for the barplot dev.set(dev.prev()) # old one for dendrogram plot(hci) ## select subtrees in dendrogram and "see" the species distribution: identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4), DEV....
"inf")小。 相等比较时，float("+inf")与float("+inf")、float("inf")三者相等。即：
原因是数据中有标准差sd为0的行,做归一化时报错。pheatmap中做归一化采用的是scale方法: 因此如果要做scale,需要将这样的行去掉: test<-data[apply(data, 1,function(x) sd(x)!=0),]pheatmap(test,scale ="row") Ref: https://stackoverflow.com/questions/30350438/pheatmap-scale-row-giving-error-in-...
Find labels of hclust object (in dendrogram order)jefferis
NA/NaN/Inf in foreign function call (arg 11) This is true regardless of whether I change to fun="mean" or specify "median" or both Traceback: 2: hclust(d, method = "average") 1: plotClusterHeatmap(sce, hm2 = NULL, k = "meta20", m = NULL, scale = TRUE) ...