Summary: We describe a software tool to perform haplotype-based association analysis, for quantitative and qualitative traits, in population and family sam... S Purcell,MJ Daly,PC Sham - 《Bioinformatics》 被引量: 253发表: 2007年 Plabsoft: Software for simulation and data analysis in plant bree...
Based on the standard VCF (variant call format) format, CandiHap is developed to fast preselection candidate causal SNPs and gene(s) from GWAS by integrating LD result, SNP annotation, haplotype analysis and traits statistics of haplotypes. Investigators can specify genes or linkage regions based ...
We performed gene-co-expression analysis across the rehydration and subsequent dehydration RNAseq timecourse data. The 38 co-expression clusters fall under the following three general patterns with (1) high expression in desiccated tissues followed by decreases during rehydration, (2) increased expressio...
Phylogenetic analysis using the sequences generated from the haplotype analysis supported a high affinity for haplotypes IIa and IIb, both of which were distinct from haplotype I, with haplotype I basal to these and haplotype III representing the ancestral state....
Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plantAsparagus setaceus ArticleOpen access01 April 2020 Introduction Patchouli (Pogostemon cablin(Blanco) Benth.), a species in thePogostemongenus and Lamiaceae family, is a valuable medicinal and aromatic herb (Supplem...
Multi-locus sequence analysis revealed four different sequence types (strains) within the haplotype H. These findings suggest that the haplotype H is likely to be endemic in northern Europe and that the genetic diversity within the Lso species is higher than previously assumed....
Haplotype Analysis Abstract: The present invention provides an efficient way for high throughput haplotype analysis. Several polymorphic nucleic acid markers, such as SNPs, can be simultaneously and reliably determined through multiplex PCR of single nucleic acid molecules in several parallel single ...
The present invention provides an efficient way for high throughput haplotype analysis. Several polymorphic nucleic acid markers, such as SNPs, can be simultaneously and reliably de
Genetic relationships among larch species based on analysis of restriction fragment variation for chloroplast DNA The genetic relationships among eight species and three varieties (Larix decidua, L. gmelinii, L. gmelinii var. japonica, L. gmelinii var. olgensis [L. olg... Tang Qian, , R.A. En...
orLinuxplatforms in graphical user interface or command lines, and applied toany speciesof plant, animal and microbial. CandiHap is publicly available athttps://github.com/xukaili/CandiHaporhttps://bigd.big.ac.cn/biocode/tools/BT007080as an open-source software. The analysis of CandiHap can ...